General Information of Drug Off-Target (DOT) (ID: OTZVONNU)

DOT Name Transcription factor 12 (TCF12)
Synonyms TCF-12; Class B basic helix-loop-helix protein 20; bHLHb20; DNA-binding protein HTF4; E-box-binding protein; Transcription factor HTF-4
Gene Name TCF12
Related Disease
Craniosynostosis 4 ( )
TCF12-related craniosynostosis ( )
Trigonocephaly ( )
TWIST1-related craniosynostosis ( )
Acute lymphocytic leukaemia ( )
Adult teratoma ( )
Advanced cancer ( )
Brain cancer ( )
Brain neoplasm ( )
Breast cancer ( )
Breast carcinoma ( )
Colorectal carcinoma ( )
Epithelial ovarian cancer ( )
Gastric cancer ( )
Glioma ( )
Hepatocellular carcinoma ( )
Hypogonadotropic hypogonadism 26 with or without anosmia ( )
Intellectual disability ( )
Kallmann syndrome ( )
Neoplasm ( )
Neuralgia ( )
Ovarian cancer ( )
Ovarian neoplasm ( )
Prostate cancer ( )
Prostate carcinoma ( )
Saethre-Chotzen syndrome ( )
Stomach cancer ( )
Syndactyly ( )
Synostosis ( )
Teratoma ( )
Obsolete isolated brachycephaly ( )
Obsolete isolated plagiocephaly ( )
Alopecia ( )
Bone osteosarcoma ( )
Craniosynostosis ( )
Gallbladder cancer ( )
Gallbladder carcinoma ( )
Head and neck carcinoma ( )
Hypertrichosis ( )
Meningioma ( )
Meningitis ( )
Osteosarcoma ( )
Periodontitis ( )
UniProt ID
HTF4_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
2KNH; 4JOL
Pfam ID
PF00010
Sequence
MNPQQQRMAAIGTDKELSDLLDFSAMFSPPVNSGKTRPTTLGSSQFSGSGIDERGGTTSW
GTSGQPSPSYDSSRGFTDSPHYSDHLNDSRLGAHEGLSPTPFMNSNLMGKTSERGSFSLY
SRDTGLPGCQSSLLRQDLGLGSPAQLSSSGKPGTAYYSFSATSSRRRPLHDSAALDPLQA
KKVRKVPPGLPSSVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGTHNSSDLWSS
SNGMSQPGFGGILGTSTSHMSQSSSYGNLHSHDRLSYPPHSVSPTDINTSLPPMSSFHRG
STSSSPYVAASHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNP
STPVGSPSPLTGTSQWPRPGGQAPSSPSYENSLHSLQSRMEDRLDRLDDAIHVLRNHAVG
PSTSLPAGHSDIHSLLGPSHNAPIGSLNSNYGGSSLVASSRSASMVGTHREDSVSLNGNH
SVLSSTVTTSSTDLNHKTQENYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPSSDDMKS
DDESSQKDIKVSSRGRTSSTNEDEDLNPEQKIEREKERRMANNARERLRVRDINEAFKEL
GRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRERNLNPKAACLKRREEEKVSAVSAE
PPTTLPGTHPGLSETTNPMGHM
Function
Transcriptional regulator. Involved in the initiation of neuronal differentiation. Activates transcription by binding to the E box (5'-CANNTG-3'). May be involved in the functional network that regulates the development of the GnRH axis.
Tissue Specificity Expressed in several tissues and cell types including skeletal muscle, thymus, and a B-cell line.
Reactome Pathway
RUNX1 regulates transcription of genes involved in differentiation of HSCs (R-HSA-8939236 )
NGF-stimulated transcription (R-HSA-9031628 )
Myogenesis (R-HSA-525793 )

Molecular Interaction Atlas (MIA) of This DOT

43 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Craniosynostosis 4 DISZX1GK Definitive Biomarker [1]
TCF12-related craniosynostosis DIS06KE9 Definitive Autosomal dominant [2]
Trigonocephaly DISHV6BA Definitive Biomarker [1]
TWIST1-related craniosynostosis DISGRP2G Definitive Biomarker [1]
Acute lymphocytic leukaemia DISPX75S Strong Biomarker [3]
Adult teratoma DISBY81U Strong Altered Expression [4]
Advanced cancer DISAT1Z9 Strong Genetic Variation [5]
Brain cancer DISBKFB7 Strong Biomarker [6]
Brain neoplasm DISY3EKS Strong Biomarker [6]
Breast cancer DIS7DPX1 Strong Biomarker [7]
Breast carcinoma DIS2UE88 Strong Biomarker [7]
Colorectal carcinoma DIS5PYL0 Strong Biomarker [8]
Epithelial ovarian cancer DIS56MH2 Strong Biomarker [9]
Gastric cancer DISXGOUK Strong Biomarker [10]
Glioma DIS5RPEH Strong Altered Expression [11]
Hepatocellular carcinoma DIS0J828 Strong Biomarker [12]
Hypogonadotropic hypogonadism 26 with or without anosmia DISOM7UR Strong Autosomal dominant [1]
Intellectual disability DISMBNXP Strong Genetic Variation [13]
Kallmann syndrome DISO3HDG Strong Autosomal recessive [14]
Neoplasm DISZKGEW Strong Biomarker [9]
Neuralgia DISWO58J Strong Biomarker [15]
Ovarian cancer DISZJHAP Strong Biomarker [16]
Ovarian neoplasm DISEAFTY Strong Biomarker [16]
Prostate cancer DISF190Y Strong Altered Expression [17]
Prostate carcinoma DISMJPLE Strong Altered Expression [17]
Saethre-Chotzen syndrome DIS3A437 Strong Biomarker [18]
Stomach cancer DISKIJSX Strong Biomarker [10]
Syndactyly DISZK2BT Strong Genetic Variation [19]
Synostosis DISXGMZW Strong Genetic Variation [20]
Teratoma DIS6ICY4 Strong Altered Expression [4]
Obsolete isolated brachycephaly DIS39ZDS Supportive Autosomal dominant [1]
Obsolete isolated plagiocephaly DISSZTKC Supportive Autosomal dominant [1]
Alopecia DIS37HU4 Limited Genetic Variation [21]
Bone osteosarcoma DIST1004 Limited Altered Expression [22]
Craniosynostosis DIS6J405 Limited Biomarker [18]
Gallbladder cancer DISXJUAF Limited Biomarker [23]
Gallbladder carcinoma DISD6ACL Limited Biomarker [23]
Head and neck carcinoma DISOU1DS Limited Altered Expression [24]
Hypertrichosis DISZUK5W Limited Biomarker [25]
Meningioma DISPT4TG Limited Biomarker [26]
Meningitis DISQABAA Limited Biomarker [27]
Osteosarcoma DISLQ7E2 Limited Altered Expression [22]
Periodontitis DISI9JOI Limited Genetic Variation [28]
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⏷ Show the Full List of 43 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
5 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the methylation of Transcription factor 12 (TCF12). [29]
Arsenic DMTL2Y1 Approved Arsenic affects the methylation of Transcription factor 12 (TCF12). [35]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 increases the phosphorylation of Transcription factor 12 (TCF12). [44]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the methylation of Transcription factor 12 (TCF12). [45]
Coumarin DM0N8ZM Investigative Coumarin decreases the phosphorylation of Transcription factor 12 (TCF12). [44]
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18 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Ciclosporin DMAZJFX Approved Ciclosporin increases the expression of Transcription factor 12 (TCF12). [30]
Tretinoin DM49DUI Approved Tretinoin decreases the expression of Transcription factor 12 (TCF12). [31]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Transcription factor 12 (TCF12). [32]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Transcription factor 12 (TCF12). [33]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate increases the expression of Transcription factor 12 (TCF12). [34]
Quercetin DM3NC4M Approved Quercetin decreases the expression of Transcription factor 12 (TCF12). [36]
Calcitriol DM8ZVJ7 Approved Calcitriol decreases the expression of Transcription factor 12 (TCF12). [31]
Methotrexate DM2TEOL Approved Methotrexate increases the expression of Transcription factor 12 (TCF12). [37]
Selenium DM25CGV Approved Selenium decreases the expression of Transcription factor 12 (TCF12). [38]
Cytarabine DMZD5QR Approved Cytarabine increases the expression of Transcription factor 12 (TCF12). [39]
Irinotecan DMP6SC2 Approved Irinotecan decreases the expression of Transcription factor 12 (TCF12). [40]
Resveratrol DM3RWXL Phase 3 Resveratrol increases the expression of Transcription factor 12 (TCF12). [41]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene decreases the expression of Transcription factor 12 (TCF12). [42]
Leflunomide DMR8ONJ Phase 1 Trial Leflunomide increases the expression of Transcription factor 12 (TCF12). [43]
Trichostatin A DM9C8NX Investigative Trichostatin A increases the expression of Transcription factor 12 (TCF12). [46]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Transcription factor 12 (TCF12). [47]
geraniol DMS3CBD Investigative geraniol increases the expression of Transcription factor 12 (TCF12). [48]
ELLAGIC ACID DMX8BS5 Investigative ELLAGIC ACID increases the expression of Transcription factor 12 (TCF12). [41]
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⏷ Show the Full List of 18 Drug(s)

References

1 Mutations in TCF12, encoding a basic helix-loop-helix partner of TWIST1, are a frequent cause of coronal craniosynostosis. Nat Genet. 2013 Mar;45(3):304-7. doi: 10.1038/ng.2531. Epub 2013 Jan 27.
2 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
3 Basic helix-loop-helix proteins E2A and HEB induce immature T-cell receptor rearrangements in nonlymphoid cells.Blood. 2001 Oct 15;98(8):2456-65. doi: 10.1182/blood.v98.8.2456.
4 Targeted Disruption of TCF12 Reveals HEB as Essential in Human Mesodermal Specification and Hematopoiesis.Stem Cell Reports. 2017 Sep 12;9(3):779-795. doi: 10.1016/j.stemcr.2017.07.011. Epub 2017 Aug 10.
5 Genetic and epigenetic stability of oligodendrogliomas at recurrence.Acta Neuropathol Commun. 2017 Mar 7;5(1):18. doi: 10.1186/s40478-017-0422-z.
6 Tumor-specific usage of alternative transcription start sites in colorectal cancer identified by genome-wide exon array analysis.BMC Genomics. 2011 Oct 14;12:505. doi: 10.1186/1471-2164-12-505.
7 Med19 promotes breast cancer cell proliferation by regulating CBFA2T3/HEB expression.Breast Cancer. 2017 May;24(3):433-441. doi: 10.1007/s12282-016-0722-3. Epub 2016 Aug 29.
8 Osteopontin-integrin engagement induces HIF-1-TCF12-mediated endothelial-mesenchymal transition to exacerbate colorectal cancer.Oncotarget. 2017 Dec 22;9(4):4998-5015. doi: 10.18632/oncotarget.23578. eCollection 2018 Jan 12.
9 External validation of a 'response score' after neoadjuvant chemotherapy in patients with high-grade serous ovarian carcinoma with complete clinical response.Int J Gynecol Cancer. 2020 Jan;30(1):67-73. doi: 10.1136/ijgc-2019-000561. Epub 2019 Nov 21.
10 High expression of TCF12 contributes to gastric cancer development via being target regulated by miR-183 and activating PI3K/AKT pathway.J Cell Biochem. 2019 Aug;120(8):13903-13911. doi: 10.1002/jcb.28664. Epub 2019 Apr 15.
11 circPTN sponges miR-145-5p/miR-330-5p to promote proliferation and stemness in glioma.J Exp Clin Cancer Res. 2019 Sep 11;38(1):398. doi: 10.1186/s13046-019-1376-8.
12 TCF12 promotes the tumorigenesis and metastasis of hepatocellular carcinoma via upregulation of CXCR4 expression.Theranostics. 2019 Aug 12;9(20):5810-5827. doi: 10.7150/thno.34973. eCollection 2019.
13 Mapping Breakpoints of Complex Chromosome Rearrangements Involving a Partial Trisomy 15q23.1-q26.2 Revealed by Next Generation Sequencing and Conventional Techniques.PLoS One. 2016 May 24;11(5):e0154574. doi: 10.1371/journal.pone.0154574. eCollection 2016.
14 TCF12 haploinsufficiency causes autosomal dominant Kallmann syndrome and reveals network-level interactions between causal loci. Hum Mol Genet. 2020 Aug 11;29(14):2435-2450. doi: 10.1093/hmg/ddaa120.
15 Inhibition of miR-200b/miR-429 contributes to neuropathic pain development through targeting zinc finger E box binding protein-1.J Cell Physiol. 2018 Jun;233(6):4815-4824. doi: 10.1002/jcp.26284. Epub 2018 Jan 15.
16 TCF12 overexpression as a poor prognostic factor in ovarian cancer.Pathol Res Pract. 2019 Sep;215(9):152527. doi: 10.1016/j.prp.2019.152527. Epub 2019 Jul 7.
17 Decreased expression of TCF12 contributes to progression and predicts biochemical recurrence in patients with prostate cancer.Tumour Biol. 2017 Jun;39(6):1010428317703924. doi: 10.1177/1010428317703924.
18 Deviating dental arch morphology in mild coronal craniosynostosis syndromes.Clin Oral Investig. 2019 Jul;23(7):2995-3003. doi: 10.1007/s00784-018-2710-9. Epub 2018 Nov 3.
19 Clinical spectrum and outcomes in families with coronal synostosis and TCF12 mutations.Eur J Hum Genet. 2014 Dec;22(12):1413-6. doi: 10.1038/ejhg.2014.57. Epub 2014 Apr 16.
20 Identification of Intragenic Exon Deletions and Duplication of TCF12 by Whole Genome or Targeted Sequencing as a Cause of TCF12-Related Craniosynostosis.Hum Mutat. 2016 Aug;37(8):732-6. doi: 10.1002/humu.23010. Epub 2016 Jun 2.
21 Genetic prediction of male pattern baldness.PLoS Genet. 2017 Feb 14;13(2):e1006594. doi: 10.1371/journal.pgen.1006594. eCollection 2017 Feb.
22 DEAD-Box Helicase 5 Interacts With Transcription Factor 12 and Promotes the Progression of Osteosarcoma by Stimulating Cell Cycle Progression.Front Pharmacol. 2019 Jan 24;9:1558. doi: 10.3389/fphar.2018.01558. eCollection 2018.
23 HDAC1 promoted migration and invasion binding with TCF12 by promoting EMT progress in gallbladder cancer.Oncotarget. 2016 May 31;7(22):32754-64. doi: 10.18632/oncotarget.8740.
24 MicroRNA-211 Enhances the Oncogenicity of Carcinogen-Induced Oral Carcinoma by Repressing TCF12 and Increasing Antioxidant Activity.Cancer Res. 2016 Aug 15;76(16):4872-86. doi: 10.1158/0008-5472.CAN-15-1664. Epub 2016 May 24.
25 A donor-specific QTL, exhibiting allelic variation for leaf sheath hairiness in a nested association mapping population, is located on barley chromosome 4H.PLoS One. 2017 Dec 7;12(12):e0189446. doi: 10.1371/journal.pone.0189446. eCollection 2017.
26 SNHG1/miR-556-5p/TCF12 feedback loop enhances the tumorigenesis of meningioma through Wnt signaling pathway.J Cell Biochem. 2020 Feb;121(2):1880-1889. doi: 10.1002/jcb.29423. Epub 2019 Nov 6.
27 CIMAvax-EGF: Toward long-term survival of advanced NSCLC.Semin Oncol. 2018 Jan;45(1-2):34-40. doi: 10.1053/j.seminoncol.2018.04.009. Epub 2018 May 1.
28 Salivary Cytokine Biomarker Concentrations in Relation to Obesity and Periodontitis.J Clin Med. 2019 Dec 5;8(12):2152. doi: 10.3390/jcm8122152.
29 Nuclear and Mitochondrial DNA Methylation Patterns Induced by Valproic Acid in Human Hepatocytes. Chem Res Toxicol. 2017 Oct 16;30(10):1847-1854. doi: 10.1021/acs.chemrestox.7b00171. Epub 2017 Sep 13.
30 Integrating multiple omics to unravel mechanisms of Cyclosporin A induced hepatotoxicity in vitro. Toxicol In Vitro. 2015 Apr;29(3):489-501.
31 Comparison of the gene expression profiles of monocytic versus granulocytic lineages of HL-60 leukemia cell differentiation by DNA microarray analysis. Life Sci. 2003 Aug 15;73(13):1705-19. doi: 10.1016/s0024-3205(03)00515-0.
32 Gene expression analysis of precision-cut human liver slices indicates stable expression of ADME-Tox related genes. Toxicol Appl Pharmacol. 2011 May 15;253(1):57-69.
33 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
34 Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper. Physiol Genomics. 2009 Aug 7;38(3):386-401.
35 Prenatal arsenic exposure and the epigenome: identifying sites of 5-methylcytosine alterations that predict functional changes in gene expression in newborn cord blood and subsequent birth outcomes. Toxicol Sci. 2015 Jan;143(1):97-106. doi: 10.1093/toxsci/kfu210. Epub 2014 Oct 10.
36 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
37 The contribution of methotrexate exposure and host factors on transcriptional variance in human liver. Toxicol Sci. 2007 Jun;97(2):582-94.
38 Selenium and vitamin E: cell type- and intervention-specific tissue effects in prostate cancer. J Natl Cancer Inst. 2009 Mar 4;101(5):306-20.
39 Cytosine arabinoside induces ectoderm and inhibits mesoderm expression in human embryonic stem cells during multilineage differentiation. Br J Pharmacol. 2011 Apr;162(8):1743-56.
40 Clinical determinants of response to irinotecan-based therapy derived from cell line models. Clin Cancer Res. 2008 Oct 15;14(20):6647-55.
41 Interactive gene expression pattern in prostate cancer cells exposed to phenolic antioxidants. Life Sci. 2002 Mar 1;70(15):1821-39.
42 Transcriptional signature of human macrophages exposed to the environmental contaminant benzo(a)pyrene. Toxicol Sci. 2010 Apr;114(2):247-59.
43 Endoplasmic reticulum stress and MAPK signaling pathway activation underlie leflunomide-induced toxicity in HepG2 Cells. Toxicology. 2017 Dec 1;392:11-21.
44 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
45 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
46 From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.
47 Gene expression changes in primary human nasal epithelial cells exposed to formaldehyde in vitro. Toxicol Lett. 2010 Oct 5;198(2):289-95.
48 Geraniol suppresses prostate cancer growth through down-regulation of E2F8. Cancer Med. 2016 Oct;5(10):2899-2908.