General Information of Drug Off-Target (DOT) (ID: OTKLQU00)

DOT Name Retinoic acid-induced protein 1 (RAI1)
Gene Name RAI1
Related Disease
Smith-Magenis syndrome ( )
Advanced cancer ( )
Anxiety disorder ( )
Breast carcinoma ( )
Charcot-Marie-Tooth disease type 1A ( )
Epilepsy ( )
Hereditary neuropathy with liability to pressure palsies ( )
Melanoma ( )
Mental disorder ( )
Non-insulin dependent diabetes ( )
Obstructive sleep apnea ( )
Peripheral neuropathy ( )
Sleep disorder ( )
Spinocerebellar ataxia type 2 ( )
Trichohepatoenteric syndrome ( )
Fragile X syndrome ( )
Intellectual disability ( )
Neurodevelopmental disorder ( )
Potocki-Lupski syndrome ( )
Schizophrenia ( )
Autism ( )
Autism spectrum disorder ( )
Breast cancer ( )
Parkinson disease ( )
UniProt ID
RAI1_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Pfam ID
PF13771
Sequence
MQSFRERCGFHGKQQNYQQTSQETSRLENYRQPSQAGLSCDRQRLLAKDYYNPQPYPSYE
GGAGTPSGTAAAVAADKYHRGSKALPTQQGLQGRPAFPGYGVQDSSPYPGRYAGEESLQA
WGAPQPPPPQPQPLPAGVAKYDENLMKKTAVPPSRQYAEQGAQVPFRTHSLHVQQPPPPQ
QPLAYPKLQRQKLQNDIASPLPFPQGTHFPQHSQSFPTSSTYSSSVQGGGQGAHSYKSCT
APTAQPHDRPLTASSSLAPGQRVQNLHAYQSGRLSYDQQQQQQQQQQQQQQALQSRHHAQ
ETLHYQNLAKYQHYGQQGQGYCQPDAAVRTPEQYYQTFSPSSSHSPARSVGRSPSYSSTP
SPLMPNLENFPYSQQPLSTGAFPAGITDHSHFMPLLNPSPTDATSSVDTQAGNCKPLQKD
KLPENLLSDLSLQSLTALTSQVENISNTVQQLLLSKAAVPQKKGVKNLVSRTPEQHKSQH
CSPEGSGYSAEPAGTPLSEPPSSTPQSTHAEPQEADYLSGSEDPLERSFLYCNQARGSPA
RVNSNSKAKPESVSTCSVTSPDDMSTKSDDSFQSLHGSLPLDSFSKFVAGERDCPRLLLS
ALAQEDLASEILGLQEAIGEKADKAWAEAPSLVKDSSKPPFSLENHSACLDSVAKSAWPR
PGEPEALPDSLQLDKGGNAKDFSPGLFEDPSVAFATPDPKKTTGPLSFGTKPTLGVPAPD
PTTAAFDCFPDTTAASSADSANPFAWPEENLGDACPRWGLHPGELTKGLEQGGKASDGIS
KGDTHEASACLGFQEEDPPGEKVASLPGDFKQEEVGGVKEEAGGLLQCPEVAKADRWLED
SRHCCSTADFGDLPLLPPTSRKEDLEAEEEYSSLCELLGSPEQRPGMQDPLSPKAPLICT
KEEVEEVLDSKAGWGSPCHLSGESVILLGPTVGTESKVQSWFESSLSHMKPGEEGPDGER
APGDSTTSDASLAQKPNKPAVPEAPIAKKEPVPRGKSLRSRRVHRGLPEAEDSPCRAPVL
PKDLLLPESCTGPPQGQMEGAGAPGRGASEGLPRMCTRSLTALSEPRTPGPPGLTTTPAP
PDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPSTPGKD
QRSMILRSRTKTQEIFHSKRRRPSEGRLPNCRATKKLLDNSHLPATFKVSSSPQKEGRVS
QRARVPKPGAGSKLSDRPLHALKRKSAFMAPVPTKKRNLVLRSRSSSSSNASGNGGDGKE
ERPEGSPTLFKRMSSPKKAKPTKGNGEPATKLPPPETPDACLKLASRAAFQGAMKTKVLP
PRKGRGLKLEAIVQKITSPSLKKFACKAPGASPGNPLSPSLSDKDRGLKGAGGSPVGVEE
GLVNVGTGQKLPTSGADPLCRNPTNRSLKGKLMNSKKLSSTDCFKTEAFTSPEALQPGGT
ALAPKKRSRKGRAGAHGLSKGPLEKRPYLGPALLLTPRDRASGTQGASEDNSGGGGKKPK
MEELGLASQPPEGRPCQPQTRAQKQPGHTNYSSYSKRKRLTRGRAKNTTSSPCKGRAKRR
RQQQVLPLDPAEPEIRLKYISSCKRLRSDSRTPAFSPFVRVEKRDAFTTICTVVNSPGDA
PKPHRKPSSSASSSSSSSSFSLDAAGASLATLPGGSILQPRPSLPLSSTMHLGPVVSKAL
STSCLVCCLCQNPANFKDLGDLCGPYYPEHCLPKKKPKLKEKVRPEGTCEEASLPLERTL
KGPECAAAATAGKPPRPDGPADPAKQGPLRTSARGLSRRLQSCYCCDGREDGGEEAAPAD
KGRKHECSKEAPAEPGGEAQEHWVHEACAVWTGGVYLVAGKLFGLQEAMKVAVDMMCSSC
QEAGATIGCCHKGCLHTYHYPCASDAGCIFIEENFSLKCPKHKRLP
Function
Transcriptional regulator of the circadian clock components: CLOCK, BMAL1, BMAL2, PER1/3, CRY1/2, NR1D1/2 and RORA/C. Positively regulates the transcriptional activity of CLOCK a core component of the circadian clock. Regulates transcription through chromatin remodeling by interacting with other proteins in chromatin as well as proteins in the basic transcriptional machinery. May be important for embryonic and postnatal development. May be involved in neuronal differentiation.
Tissue Specificity Expressed in all tissues examined with higher expression in the heart and brain. No expression was seen in the corpus callosum of the brain.
Reactome Pathway
Heme signaling (R-HSA-9707616 )
Circadian Clock (R-HSA-400253 )

Molecular Interaction Atlas (MIA) of This DOT

24 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Smith-Magenis syndrome DISG4G6X Definitive Autosomal dominant [1]
Advanced cancer DISAT1Z9 Strong Genetic Variation [2]
Anxiety disorder DISBI2BT Strong Biomarker [3]
Breast carcinoma DIS2UE88 Strong Biomarker [4]
Charcot-Marie-Tooth disease type 1A DISSRZG7 Strong Genetic Variation [5]
Epilepsy DISBB28L Strong Biomarker [6]
Hereditary neuropathy with liability to pressure palsies DISY0X1V Strong Genetic Variation [7]
Melanoma DIS1RRCY Strong Biomarker [8]
Mental disorder DIS3J5R8 Strong Altered Expression [9]
Non-insulin dependent diabetes DISK1O5Z Strong Genetic Variation [10]
Obstructive sleep apnea DIS0SVD1 Strong Biomarker [11]
Peripheral neuropathy DIS7KN5G Strong Biomarker [7]
Sleep disorder DIS3JP1U Strong Genetic Variation [12]
Spinocerebellar ataxia type 2 DISF7WDI Strong Biomarker [13]
Trichohepatoenteric syndrome DISL3ODF Strong Biomarker [14]
Fragile X syndrome DISE8W3A moderate Genetic Variation [12]
Intellectual disability DISMBNXP moderate Biomarker [15]
Neurodevelopmental disorder DIS372XH moderate Genetic Variation [12]
Potocki-Lupski syndrome DISUOI38 Moderate Autosomal dominant [16]
Schizophrenia DISSRV2N moderate Genetic Variation [17]
Autism DISV4V1Z Limited Biomarker [18]
Autism spectrum disorder DISXK8NV Limited Genetic Variation [19]
Breast cancer DIS7DPX1 Limited Genetic Variation [4]
Parkinson disease DISQVHKL Limited Genetic Variation [20]
------------------------------------------------------------------------------------
⏷ Show the Full List of 24 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
6 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the methylation of Retinoic acid-induced protein 1 (RAI1). [21]
Ciclosporin DMAZJFX Approved Ciclosporin decreases the methylation of Retinoic acid-induced protein 1 (RAI1). [22]
TAK-243 DM4GKV2 Phase 1 TAK-243 decreases the sumoylation of Retinoic acid-induced protein 1 (RAI1). [29]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 affects the phosphorylation of Retinoic acid-induced protein 1 (RAI1). [31]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the methylation of Retinoic acid-induced protein 1 (RAI1). [32]
Coumarin DM0N8ZM Investigative Coumarin affects the phosphorylation of Retinoic acid-induced protein 1 (RAI1). [31]
------------------------------------------------------------------------------------
⏷ Show the Full List of 6 Drug(s)
10 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Retinoic acid-induced protein 1 (RAI1). [23]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Retinoic acid-induced protein 1 (RAI1). [24]
Estradiol DMUNTE3 Approved Estradiol increases the expression of Retinoic acid-induced protein 1 (RAI1). [25]
Menadione DMSJDTY Approved Menadione affects the expression of Retinoic acid-induced protein 1 (RAI1). [26]
Urethane DM7NSI0 Phase 4 Urethane decreases the expression of Retinoic acid-induced protein 1 (RAI1). [27]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene decreases the expression of Retinoic acid-induced protein 1 (RAI1). [28]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of Retinoic acid-induced protein 1 (RAI1). [30]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of Retinoic acid-induced protein 1 (RAI1). [33]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Retinoic acid-induced protein 1 (RAI1). [34]
Coumestrol DM40TBU Investigative Coumestrol decreases the expression of Retinoic acid-induced protein 1 (RAI1). [35]
------------------------------------------------------------------------------------
⏷ Show the Full List of 10 Drug(s)

References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 Smith-Magenis Syndrome Patients Often Display Antibody Deficiency but Not Other Immune Pathologies.J Allergy Clin Immunol Pract. 2017 Sep-Oct;5(5):1344-1350.e3. doi: 10.1016/j.jaip.2017.01.028. Epub 2017 Mar 9.
3 How much is too much? Phenotypic consequences of Rai1 overexpression in mice.Eur J Hum Genet. 2008 Aug;16(8):941-54. doi: 10.1038/ejhg.2008.21. Epub 2008 Feb 20.
4 RAI1 Alternate Probe Identifies Additional Breast Cancer Cases as Amplified Following Equivocal HER2 Fluorescence In Situ Hybridization Testing: Experience From a National Reference Laboratory.Arch Pathol Lab Med. 2017 Feb;141(2):274-278. doi: 10.5858/arpa.2016-0201-OA. Epub 2016 Dec 13.
5 Nonrecurrent 17p11.2p12 Rearrangement Events that Result in Two Concomitant Genomic Disorders: The PMP22-RAI1 Contiguous Gene Duplication Syndrome.Am J Hum Genet. 2015 Nov 5;97(5):691-707. doi: 10.1016/j.ajhg.2015.10.003.
6 IL-1-31/IL1-RA genetic markers association with idiopathic generalized epilepsy and treatment response in a cohort of Egyptian population.Int J Neurosci. 2020 Apr;130(4):348-354. doi: 10.1080/00207454.2019.1688809. Epub 2019 Nov 7.
7 Nonrecurrent PMP22-RAI1 contiguous gene deletions arise from replication-based mechanisms and result in Smith-Magenis syndrome with evident peripheral neuropathy.Hum Genet. 2016 Oct;135(10):1161-74. doi: 10.1007/s00439-016-1703-5. Epub 2016 Jul 7.
8 Aggressiveness of human melanoma xenograft models is promoted by aneuploidy-driven gene expression deregulation.Oncotarget. 2012 Apr;3(4):399-413. doi: 10.18632/oncotarget.473.
9 Evidence for genetic regulation of mRNA expression of the dosage-sensitive gene retinoic acid induced-1 (RAI1) in human brain.Sci Rep. 2016 Jan 8;6:19010. doi: 10.1038/srep19010.
10 Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.Nat Commun. 2018 Jul 27;9(1):2941. doi: 10.1038/s41467-018-04951-w.
11 Multiethnic Meta-Analysis Identifies RAI1 as a Possible Obstructive Sleep Apnea-related Quantitative Trait Locus in Men.Am J Respir Cell Mol Biol. 2018 Mar;58(3):391-401. doi: 10.1165/rcmb.2017-0237OC.
12 MBD5 haploinsufficiency is associated with sleep disturbance and disrupts circadian pathways common to Smith-Magenis and fragile X syndromes.Eur J Hum Genet. 2015 Jun;23(6):781-9. doi: 10.1038/ejhg.2014.200. Epub 2014 Oct 1.
13 Modulation of age at onset in Huntington's disease and spinocerebellar ataxia type 2 patients originated from eastern India.Neurosci Lett. 2003 Jul 17;345(2):93-6. doi: 10.1016/s0304-3940(03)00436-1.
14 Genotype-phenotype correlation in Smith-Magenis syndrome: evidence that multiple genes in 17p11.2 contribute to the clinical spectrum.Genet Med. 2006 Jul;8(7):417-27. doi: 10.1097/01.gim.0000228215.32110.89.
15 Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.Genome Med. 2016 Nov 1;8(1):105. doi: 10.1186/s13073-016-0359-z.
16 Classification of Genes: Standardized Clinical Validity Assessment of Gene-Disease Associations Aids Diagnostic Exome Analysis and Reclassifications. Hum Mutat. 2017 May;38(5):600-608. doi: 10.1002/humu.23183. Epub 2017 Feb 13.
17 Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.Nat Genet. 2018 Mar;50(3):381-389. doi: 10.1038/s41588-018-0059-2. Epub 2018 Feb 26.
18 Expression in the human brain of retinoic acid induced 1, a protein associated with neurobehavioural disorders.Brain Struct Funct. 2015 Mar;220(2):1195-203. doi: 10.1007/s00429-014-0712-1. Epub 2014 Feb 12.
19 Reversed gender ratio of autism spectrum disorder in Smith-Magenis syndrome.Mol Autism. 2018 Jan 8;9:1. doi: 10.1186/s13229-017-0184-2. eCollection 2018.
20 Genome-wide assessment of Parkinson's disease in a Southern Spanish population.Neurobiol Aging. 2016 Sep;45:213.e3-213.e9. doi: 10.1016/j.neurobiolaging.2016.06.001. Epub 2016 Jun 11.
21 Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
22 Integrative "-Omics" analysis in primary human hepatocytes unravels persistent mechanisms of cyclosporine A-induced cholestasis. Chem Res Toxicol. 2016 Dec 19;29(12):2164-2174.
23 Blood transcript immune signatures distinguish a subset of people with elevated serum ALT from others given acetaminophen. Clin Pharmacol Ther. 2016 Apr;99(4):432-41.
24 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
25 Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner. Genome Res. 2012 Nov;22(11):2153-62.
26 Global gene expression analysis reveals differences in cellular responses to hydroxyl- and superoxide anion radical-induced oxidative stress in caco-2 cells. Toxicol Sci. 2010 Apr;114(2):193-203. doi: 10.1093/toxsci/kfp309. Epub 2009 Dec 31.
27 Ethyl carbamate induces cell death through its effects on multiple metabolic pathways. Chem Biol Interact. 2017 Nov 1;277:21-32.
28 Transcriptional signature of human macrophages exposed to the environmental contaminant benzo(a)pyrene. Toxicol Sci. 2010 Apr;114(2):247-59.
29 Inhibiting ubiquitination causes an accumulation of SUMOylated newly synthesized nuclear proteins at PML bodies. J Biol Chem. 2019 Oct 18;294(42):15218-15234. doi: 10.1074/jbc.RA119.009147. Epub 2019 Jul 8.
30 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
31 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
32 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
33 A trichostatin A expression signature identified by TempO-Seq targeted whole transcriptome profiling. PLoS One. 2017 May 25;12(5):e0178302. doi: 10.1371/journal.pone.0178302. eCollection 2017.
34 Gene expression changes in primary human nasal epithelial cells exposed to formaldehyde in vitro. Toxicol Lett. 2010 Oct 5;198(2):289-95.
35 Pleiotropic combinatorial transcriptomes of human breast cancer cells exposed to mixtures of dietary phytoestrogens. Food Chem Toxicol. 2009 Apr;47(4):787-95.