General Information of Drug Off-Target (DOT) (ID: OTW5MKC1)

DOT Name RNA-binding region-containing protein 3 (RNPC3)
Synonyms RNA-binding motif protein 40; RNA-binding protein 40; U11/U12 small nuclear ribonucleoprotein 65 kDa protein; U11/U12 snRNP 65 kDa protein; U11/U12-65K
Gene Name RNPC3
Related Disease
Isolated growth hormone deficiency, type 5 ( )
Advanced cancer ( )
Ataxia-telangiectasia ( )
Autoimmune hepatitis ( )
C1Q deficiency ( )
Connective tissue disorder ( )
Depression ( )
Dermatomyositis ( )
Dyskeratosis congenita ( )
Familial Mediterranean fever ( )
Glomerulonephritis ( )
Hantavirus infection ( )
Idiopathic inflammatory myopathy ( )
Influenza ( )
Leukopenia ( )
Mixed connective tissue disease ( )
Neoplasm ( )
Non-insulin dependent diabetes ( )
Pulmonary arterial hypertension ( )
Sjogren syndrome ( )
Thrombocytopenia ( )
High blood pressure ( )
Lupus ( )
Spinal muscular atrophy ( )
Isolated growth hormone deficiency type IA ( )
Arthritis ( )
Nematode infection ( )
Pituitary dwarfism ( )
Type-1/2 diabetes ( )
UniProt ID
RNPC3_HUMAN
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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PDB ID
3EGN; 5OBN
Pfam ID
PF00076
Sequence
MAAPEQPLAISRGCTSSSSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSD
KGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPTSGSEKKKR
SDDPVEDDKEKKELGYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVP
KFYVQVLHLMNKMNLPTPFGPITARPPMYEDYMPLHAPLPPTSPQPPEEPPLPDEDEELS
SEESEYESTDDEDRQRMNKLMELANLQPKRPKTIKQRHVRKKRKIKDMLNTPLCPSHSSL
HPVLLPSDVFDQPQPVGNKRIEFHISTDMPAAFKKDLEKEQNCEEKNHDLPATEVDASNI
GFGKIFPKPNLDITEEIKEDSDEMPSECISRRELEKGRISREEMETLSVFRSYEPGEPNC
RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA
KALKEANGYVLFGKPMVVQFARSARPKQDPKEGKRKC
Function
Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.
Tissue Specificity Highly expressed in pancreas and kidney. Detected at lower levels in heart, brain, placenta, lung, liver, spleen, thymus, prostate, testis, ovary, small intestine, colon and leukocytes.
Reactome Pathway
mRNA Splicing - Minor Pathway (R-HSA-72165 )

Molecular Interaction Atlas (MIA) of This DOT

29 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Isolated growth hormone deficiency, type 5 DISVY7CR Definitive Autosomal recessive [1]
Advanced cancer DISAT1Z9 Strong Biomarker [2]
Ataxia-telangiectasia DISP3EVR Strong Biomarker [3]
Autoimmune hepatitis DISOX03Q Strong Biomarker [4]
C1Q deficiency DISWV4KU Strong Biomarker [5]
Connective tissue disorder DISKXBS3 Strong Biomarker [6]
Depression DIS3XJ69 Strong Biomarker [7]
Dermatomyositis DIS50C5O Strong Biomarker [8]
Dyskeratosis congenita DISSXV0K Strong Biomarker [9]
Familial Mediterranean fever DISVP5WP Strong Genetic Variation [10]
Glomerulonephritis DISPZIQ3 Strong Biomarker [11]
Hantavirus infection DISZFTMH Strong Biomarker [12]
Idiopathic inflammatory myopathy DISGB1BZ Strong Biomarker [13]
Influenza DIS3PNU3 Strong Biomarker [14]
Leukopenia DISJMBMM Strong Biomarker [15]
Mixed connective tissue disease DISXX0H8 Strong Biomarker [8]
Neoplasm DISZKGEW Strong Altered Expression [16]
Non-insulin dependent diabetes DISK1O5Z Strong Biomarker [17]
Pulmonary arterial hypertension DISP8ZX5 Strong Biomarker [18]
Sjogren syndrome DISUBX7H Strong Biomarker [19]
Thrombocytopenia DISU61YW Strong Biomarker [15]
High blood pressure DISY2OHH moderate Biomarker [20]
Lupus DISOKJWA moderate Biomarker [21]
Spinal muscular atrophy DISTLKOB moderate Biomarker [22]
Isolated growth hormone deficiency type IA DISLPIAM Supportive Autosomal recessive [23]
Arthritis DIST1YEL Limited Genetic Variation [24]
Nematode infection DISVFLRK Limited Biomarker [25]
Pituitary dwarfism DISI019B Limited Genetic Variation [26]
Type-1/2 diabetes DISIUHAP Limited Biomarker [27]
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⏷ Show the Full List of 29 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
4 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the methylation of RNA-binding region-containing protein 3 (RNPC3). [28]
Quercetin DM3NC4M Approved Quercetin decreases the phosphorylation of RNA-binding region-containing protein 3 (RNPC3). [31]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 decreases the phosphorylation of RNA-binding region-containing protein 3 (RNPC3). [31]
Bisphenol A DM2ZLD7 Investigative Bisphenol A increases the methylation of RNA-binding region-containing protein 3 (RNPC3). [35]
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7 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of RNA-binding region-containing protein 3 (RNPC3). [29]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of RNA-binding region-containing protein 3 (RNPC3). [30]
Urethane DM7NSI0 Phase 4 Urethane increases the expression of RNA-binding region-containing protein 3 (RNPC3). [32]
Leflunomide DMR8ONJ Phase 1 Trial Leflunomide decreases the expression of RNA-binding region-containing protein 3 (RNPC3). [33]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of RNA-binding region-containing protein 3 (RNPC3). [34]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of RNA-binding region-containing protein 3 (RNPC3). [36]
Deguelin DMXT7WG Investigative Deguelin decreases the expression of RNA-binding region-containing protein 3 (RNPC3). [37]
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⏷ Show the Full List of 7 Drug(s)

References

1 Establishing intellectual disability as the key feature of patients with biallelic RNPC3 variants. Am J Med Genet A. 2021 Jun;185(6):1836-1840. doi: 10.1002/ajmg.a.62152. Epub 2021 Mar 1.
2 Brief Report: Anti-RNPC-3 Antibodies As a Marker of Cancer-Associated Scleroderma.Arthritis Rheumatol. 2017 Jun;69(6):1306-1312. doi: 10.1002/art.40065.
3 HIGH PREVALENCE OF HYPOTHYROIDISM IN SYSTEMIC LUPUS ERYTHEMATOSUS PATIENTS WITHOUT AN INCREASE IN CIRCULATING ANTI-THYROID ANTIBODIES.Endocr Pract. 2017 Nov;23(11):1304-1310. doi: 10.4158/EP161664.OR. Epub 2017 Aug 17.
4 Anti-tRNP(ser)sec/SLA/LP autoantibodies. Comparative study using in-house ELISA with a recombinant 48.8 kDa protein, immunoblot, and analysis of immunoprecipitated RNAs.Liver Int. 2005 Apr;25(2):410-9. doi: 10.1111/j.1478-3231.2005.01079.x.
5 Hereditary C1q deficiency and systemic lupus erythematosus.QJM. 1994 Aug;87(8):455-64.
6 Congenital heart block and subsequent connective tissue disorder in adolescence.Lupus. 1997;6(3):283-4. doi: 10.1177/096120339700600313.
7 The burden of depression in systemic sclerosis patients: a nationwide population-based study.J Affect Disord. 2019 Jan 15;243:427-431. doi: 10.1016/j.jad.2018.09.075. Epub 2018 Sep 21.
8 Facts and controversies in mixed connective tissue disease.Med Clin (Barc). 2018 Jan 12;150(1):26-32. doi: 10.1016/j.medcli.2017.06.066. Epub 2017 Aug 31.
9 Very short telomeres in the peripheral blood of patients with X-linked and autosomal dyskeratosis congenita.Blood Cells Mol Dis. 2001 Mar-Apr;27(2):353-7. doi: 10.1006/bcmd.2001.0389.
10 Determination of autoantibodies in patients with familial Mediterranean fever and their first degree relatives.J Rheumatol. 1991 Apr;18(4):606-8.
11 T cell vaccination therapy in an induced model of anti-RNP autoimmune glomerulonephritis.Clin Immunol. 2010 Nov;137(2):281-7. doi: 10.1016/j.clim.2010.07.013. Epub 2010 Aug 24.
12 Genetic properties of medium (M) and small (S) genomic RNA segments of Seoul hantavirus isolated from Rattus norvegicus and antigenicity analysis of recombinant nucleocapsid protein.Virus Genes. 2007 Jan;34(1):23-30. doi: 10.1007/s11262-006-0005-8. Epub 2006 Aug 22.
13 Immunoglobulin gene polymorphisms are susceptibility factors in clinical and autoantibody subgroups of the idiopathic inflammatory myopathies.Arthritis Rheum. 2008 Oct;58(10):3239-46. doi: 10.1002/art.23899.
14 Inhibition of Influenza A Virus Replication by TRIM14 via Its Multifaceted Protein-Protein Interaction With NP.Front Microbiol. 2019 Feb 26;10:344. doi: 10.3389/fmicb.2019.00344. eCollection 2019.
15 The clinical significance of antinuclear antibodies and specific autoantibodies in juvenile and adult systemic lupus erythematosus patients.Asian Pac J Allergy Immunol. 2021 Dec;39(4). doi: 10.12932/AP-211218-0465.
16 Long interspersed element-1 ribonucleoprotein particles protect telomeric ends in alternative lengthening of telomeres dependent cells.Neoplasia. 2020 Feb;22(2):61-75. doi: 10.1016/j.neo.2019.11.002. Epub 2019 Dec 14.
17 Lecithin nano-liposomal particle as a CRISPR/Cas9 complex delivery system for treating type 2 diabetes.J Nanobiotechnology. 2019 Jan 29;17(1):19. doi: 10.1186/s12951-019-0452-8.
18 The impact of anti-U1-RNP positivity: systemic lupus erythematosus versus mixed connective tissue disease.Rheumatol Int. 2018 Jul;38(7):1169-1178. doi: 10.1007/s00296-018-4059-4. Epub 2018 May 23.
19 Hypocomplementaemic urticarial vasculitis, angio-oedema and 'lupus-like' disease: association with C4B null allele.Clin Exp Rheumatol. 1987 Apr-Jun;5(2):161-4.
20 Prevalence of auto-antibodies associated to pulmonary arterial hypertension in scleroderma - A review.Autoimmun Rev. 2018 Dec;17(12):1186-1201. doi: 10.1016/j.autrev.2018.06.009. Epub 2018 Oct 12.
21 Associations Between Classification Criteria Items in Systemic Lupus Erythematosus.Arthritis Care Res (Hoboken). 2020 Dec;72(12):1820-1826. doi: 10.1002/acr.24078. Epub 2020 Nov 7.
22 SECIS-binding protein 2 interacts with the SMN complex and the methylosome for selenoprotein mRNP assembly and translation.Nucleic Acids Res. 2017 May 19;45(9):5399-5413. doi: 10.1093/nar/gkx031.
23 Defective minor spliceosome mRNA processing results in isolated familial growth hormone deficiency. EMBO Mol Med. 2014 Mar;6(3):299-306. doi: 10.1002/emmm.201303573. Epub 2014 Jan 30.
24 Estrogen receptor alpha gene ( ESR1) polymorphism can contribute to clinical findings in systemic lupus erythematosus patients.Lupus. 2017 Mar;26(3):294-298. doi: 10.1177/0961203316668041. Epub 2016 Sep 29.
25 Enhanced Genome Editing with Cas9 Ribonucleoprotein in Diverse Cells and Organisms.J Vis Exp. 2018 May 25;(135):57350. doi: 10.3791/57350.
26 Mutations in the U11/U12-65K protein associated with isolated growth hormone deficiency lead to structural destabilization and impaired binding of U12 snRNA.RNA. 2018 Mar;24(3):396-409. doi: 10.1261/rna.062844.117. Epub 2017 Dec 18.
27 Survival and prognostic factors in patients with connective tissue disease-associated pulmonary hypertension diagnosed by echocardiography: results from a Korean nationwide registry.Int J Rheum Dis. 2017 Sep;20(9):1227-1236. doi: 10.1111/1756-185X.12645. Epub 2015 Jul 27.
28 Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
29 Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010 May;115(1):66-79.
30 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
31 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
32 Ethyl carbamate induces cell death through its effects on multiple metabolic pathways. Chem Biol Interact. 2017 Nov 1;277:21-32.
33 Endoplasmic reticulum stress and MAPK signaling pathway activation underlie leflunomide-induced toxicity in HepG2 Cells. Toxicology. 2017 Dec 1;392:11-21.
34 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
35 Expression and DNA methylation changes in human breast epithelial cells after bisphenol A exposure. Int J Oncol. 2012 Jul;41(1):369-77.
36 A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors. Arch Toxicol. 2015 Sep;89(9):1599-618.
37 Neurotoxicity and underlying cellular changes of 21 mitochondrial respiratory chain inhibitors. Arch Toxicol. 2021 Feb;95(2):591-615. doi: 10.1007/s00204-020-02970-5. Epub 2021 Jan 29.