General Information of Drug Off-Target (DOT) (ID: OTU0UAZS)

DOT Name Semaphorin-6D (SEMA6D)
Gene Name SEMA6D
Related Disease
Attention deficit hyperactivity disorder ( )
Cryohydrocytosis ( )
Drug dependence ( )
Major depressive disorder ( )
Schizophrenia ( )
Stomach cancer ( )
Substance abuse ( )
Substance dependence ( )
Bone osteosarcoma ( )
Chronic renal failure ( )
End-stage renal disease ( )
Inflammatory bowel disease ( )
Osteosarcoma ( )
Ulcerative colitis ( )
Advanced cancer ( )
Complex neurodevelopmental disorder ( )
Lung carcinoma ( )
Malignant pleural mesothelioma ( )
Neoplasm ( )
UniProt ID
SEM6D_HUMAN
3D Structure
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2D Sequence (FASTA)
Download
3D Structure (PDB)
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Pfam ID
PF01437 ; PF01403
Sequence
MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQ
LMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQQDRENCAMKGKHKDECHN
FIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEISGLARCPFDARQTNVALFAD
GKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREI
AVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSI
TDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPED
KVPKPRPGCCAKHGLAEAYKTSIDFPDETLSFIKSHPLMDSAVPPIADEPWFTKTRVRYR
LTAISVDHSAGPYQNYTVIFVGSEAGMVLKVLAKTSPFSLNDSVLLEEIEAYNHAKCSAE
NEEDKKVISLQLDKDHHALYVAFSSCIIRIPLSRCERYGSCKKSCIASRDPYCGWLSQGS
CGRVTPGMLAEGYEQDTEFGNTAHLGDCHEILPTSTTPDYKIFGGPTSDMEVSSSSVTTM
ASIPEITPKVIDTWRPKLTSSRKFVVQDDPNTSDFTDPLSGIPKGVRWEVQSGESNQMVH
MNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGL
FDSPVKEYQQNIDSPKLYSNLLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVL
HQKTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTS
FSNSNAHKAEKKLQNIDHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDI
QMAHQNLMLDPMGSMSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLER
QRGYHKNSSQRHSISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVH
LQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY
Function
Shows growth cone collapsing activity on dorsal root ganglion (DRG) neurons in vitro. May be a stop signal for the DRG neurons in their target areas, and possibly also for other neurons. May also be involved in the maintenance and remodeling of neuronal connections.
KEGG Pathway
Axon guidance (hsa04360 )
Reactome Pathway
Other semaphorin interactions (R-HSA-416700 )

Molecular Interaction Atlas (MIA) of This DOT

19 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Attention deficit hyperactivity disorder DISL8MX9 Strong Genetic Variation [1]
Cryohydrocytosis DISMQHL3 Strong Biomarker [2]
Drug dependence DIS9IXRC Strong Biomarker [3]
Major depressive disorder DIS4CL3X Strong Genetic Variation [4]
Schizophrenia DISSRV2N Strong Genetic Variation [5]
Stomach cancer DISKIJSX Strong Biomarker [6]
Substance abuse DIS327VW Strong Biomarker [3]
Substance dependence DISDRAAR Strong Biomarker [3]
Bone osteosarcoma DIST1004 moderate Biomarker [7]
Chronic renal failure DISGG7K6 moderate Genetic Variation [8]
End-stage renal disease DISXA7GG moderate Genetic Variation [8]
Inflammatory bowel disease DISGN23E moderate Genetic Variation [9]
Osteosarcoma DISLQ7E2 moderate Biomarker [7]
Ulcerative colitis DIS8K27O moderate Genetic Variation [9]
Advanced cancer DISAT1Z9 Limited Biomarker [10]
Complex neurodevelopmental disorder DISB9AFI Limited Autosomal dominant [11]
Lung carcinoma DISTR26C Limited Genetic Variation [12]
Malignant pleural mesothelioma DIST2R60 Limited Altered Expression [13]
Neoplasm DISZKGEW Limited Altered Expression [13]
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⏷ Show the Full List of 19 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
18 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the expression of Semaphorin-6D (SEMA6D). [14]
Tretinoin DM49DUI Approved Tretinoin decreases the expression of Semaphorin-6D (SEMA6D). [15]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Semaphorin-6D (SEMA6D). [16]
Estradiol DMUNTE3 Approved Estradiol decreases the expression of Semaphorin-6D (SEMA6D). [17]
Arsenic trioxide DM61TA4 Approved Arsenic trioxide decreases the expression of Semaphorin-6D (SEMA6D). [18]
Calcitriol DM8ZVJ7 Approved Calcitriol increases the expression of Semaphorin-6D (SEMA6D). [19]
Vorinostat DMWMPD4 Approved Vorinostat decreases the expression of Semaphorin-6D (SEMA6D). [20]
Carbamazepine DMZOLBI Approved Carbamazepine affects the expression of Semaphorin-6D (SEMA6D). [21]
Panobinostat DM58WKG Approved Panobinostat decreases the expression of Semaphorin-6D (SEMA6D). [22]
Cannabidiol DM0659E Approved Cannabidiol increases the expression of Semaphorin-6D (SEMA6D). [23]
Melphalan DMOLNHF Approved Melphalan decreases the expression of Semaphorin-6D (SEMA6D). [24]
Dihydrotestosterone DM3S8XC Phase 4 Dihydrotestosterone increases the expression of Semaphorin-6D (SEMA6D). [25]
SNDX-275 DMH7W9X Phase 3 SNDX-275 decreases the expression of Semaphorin-6D (SEMA6D). [20]
Belinostat DM6OC53 Phase 2 Belinostat decreases the expression of Semaphorin-6D (SEMA6D). [22]
(+)-JQ1 DM1CZSJ Phase 1 (+)-JQ1 decreases the expression of Semaphorin-6D (SEMA6D). [27]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of Semaphorin-6D (SEMA6D). [28]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of Semaphorin-6D (SEMA6D). [30]
Formaldehyde DM7Q6M0 Investigative Formaldehyde increases the expression of Semaphorin-6D (SEMA6D). [31]
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⏷ Show the Full List of 18 Drug(s)
2 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene increases the methylation of Semaphorin-6D (SEMA6D). [26]
Bisphenol A DM2ZLD7 Investigative Bisphenol A affects the methylation of Semaphorin-6D (SEMA6D). [29]
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References

1 Genetic Markers of ADHD-Related Variations in Intracranial Volume.Am J Psychiatry. 2019 Mar 1;176(3):228-238. doi: 10.1176/appi.ajp.2018.18020149.
2 The association of semaphorins 3C, 5A and 6D with liver fibrosis stage in chronic hepatitis C.PLoS One. 2018 Dec 28;13(12):e0209481. doi: 10.1371/journal.pone.0209481. eCollection 2018.
3 Genome wide association for addiction: replicated results and comparisons of two analytic approaches.PLoS One. 2010 Jan 21;5(1):e8832. doi: 10.1371/journal.pone.0008832.
4 Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.Nat Neurosci. 2019 Mar;22(3):343-352. doi: 10.1038/s41593-018-0326-7. Epub 2019 Feb 4.
5 Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.Am J Hum Genet. 2019 Aug 1;105(2):334-350. doi: 10.1016/j.ajhg.2019.06.012.
6 Expression of semaphorin 6D in gastric carcinoma and its significance.World J Gastroenterol. 2006 Dec 7;12(45):7388-90. doi: 10.3748/wjg.v12.i45.7388.
7 A Sleeping Beauty forward genetic screen identifies new genes and pathways driving osteosarcoma development and metastasis.Nat Genet. 2015 Jun;47(6):615-24. doi: 10.1038/ng.3293. Epub 2015 May 11.
8 Novel genetic susceptibility loci for diabetic end-stage renal disease identified through robust naive Bayes classification.Diabetologia. 2014 Aug;57(8):1611-22. doi: 10.1007/s00125-014-3256-2. Epub 2014 May 29.
9 Genetic architecture differences between pediatric and adult-onset inflammatory bowel diseases in the Polish population.Sci Rep. 2016 Dec 23;6:39831. doi: 10.1038/srep39831.
10 RNA sequencing of Sleeping Beauty transposon-induced tumors detects transposon-RNA fusions in forward genetic cancer screens.Genome Res. 2016 Jan;26(1):119-29. doi: 10.1101/gr.188649.114. Epub 2015 Nov 9.
11 Classification of Genes: Standardized Clinical Validity Assessment of Gene-Disease Associations Aids Diagnostic Exome Analysis and Reclassifications. Hum Mutat. 2017 May;38(5):600-608. doi: 10.1002/humu.23183. Epub 2017 Feb 13.
12 Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.Nat Genet. 2017 Jul;49(7):1126-1132. doi: 10.1038/ng.3892. Epub 2017 Jun 12.
13 The plexin-A1 receptor activates vascular endothelial growth factor-receptor 2 and nuclear factor-kappaB to mediate survival and anchorage-independent growth of malignant mesothelioma cells.Cancer Res. 2009 Feb 15;69(4):1485-93. doi: 10.1158/0008-5472.CAN-08-3659. Epub 2009 Jan 27.
14 Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol. 2013 Jan;87(1):123-43.
15 Development of a neural teratogenicity test based on human embryonic stem cells: response to retinoic acid exposure. Toxicol Sci. 2011 Dec;124(2):370-7.
16 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
17 17-Estradiol Activates HSF1 via MAPK Signaling in ER-Positive Breast Cancer Cells. Cancers (Basel). 2019 Oct 11;11(10):1533. doi: 10.3390/cancers11101533.
18 Identification of transcriptome signatures and biomarkers specific for potential developmental toxicants inhibiting human neural crest cell migration. Arch Toxicol. 2016 Jan;90(1):159-80.
19 Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes. Mol Endocrinol. 2005 Nov;19(11):2685-95.
20 Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests. Arch Toxicol. 2017 Feb;91(2):839-864.
21 Gene Expression Regulation and Pathway Analysis After Valproic Acid and Carbamazepine Exposure in a Human Embryonic Stem Cell-Based Neurodevelopmental Toxicity Assay. Toxicol Sci. 2015 Aug;146(2):311-20. doi: 10.1093/toxsci/kfv094. Epub 2015 May 15.
22 A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors. Arch Toxicol. 2015 Sep;89(9):1599-618.
23 Cannabidiol Activates Neuronal Precursor Genes in Human Gingival Mesenchymal Stromal Cells. J Cell Biochem. 2017 Jun;118(6):1531-1546. doi: 10.1002/jcb.25815. Epub 2016 Dec 29.
24 Bone marrow osteoblast damage by chemotherapeutic agents. PLoS One. 2012;7(2):e30758. doi: 10.1371/journal.pone.0030758. Epub 2012 Feb 17.
25 LSD1 activates a lethal prostate cancer gene network independently of its demethylase function. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4179-E4188.
26 Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study. Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.
27 Targeting MYCN in neuroblastoma by BET bromodomain inhibition. Cancer Discov. 2013 Mar;3(3):308-23.
28 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
29 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
30 From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.
31 Regulation of chromatin assembly and cell transformation by formaldehyde exposure in human cells. Environ Health Perspect. 2017 Sep 21;125(9):097019.