General Information of Drug Off-Target (DOT) (ID: OT8NLZ9D)

DOT Name Protein phosphatase 1D (PPM1D)
Synonyms EC 3.1.3.16; Protein phosphatase 2C isoform delta; PP2C-delta; Protein phosphatase magnesium-dependent 1 delta; p53-induced protein phosphatase 1
Gene Name PPM1D
Related Disease
Syndromic intellectual disability ( )
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold ( )
Hereditary breast carcinoma ( )
UniProt ID
PPM1D_HUMAN
3D Structure
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2D Sequence (FASTA)
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3D Structure (PDB)
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EC Number
3.1.3.16
Pfam ID
PF00481
Sequence
MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPG
GEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHL
WGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVII
RGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSG
VNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPEPDTSVHT
LDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEEKKYLMGEHGQSCAKMLVNRALGRWRQ
RMLRADNTSAIVICISPEVDNQGNFTNEDELYLNLTDSPSYNSQETCVMTPSPCSTPPVK
SLEEDPWPRVNSKDHIPALVRSNAFSENFLEVSAEIARENVQGVVIPSKDPEPLEENCAK
ALTLRIHDSLNNSLPIGLVPTNSTNTVMDQKNLKMSTPGQMKAQEIERTPPTNFKRTLEE
SNSGPLMKKHRRNGLSRSSGAQPASLPTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRK
TVCVC
Function
Involved in the negative regulation of p53 expression. Required for the relief of p53-dependent checkpoint mediated cell cycle arrest. Binds to and dephosphorylates 'Ser-15' of TP53 and 'Ser-345' of CHEK1 which contributes to the functional inactivation of these proteins. Mediates MAPK14 dephosphorylation and inactivation. Is also an important regulator of global heterochromatin silencing and critical in maintaining genome integrity.
Tissue Specificity Expressed in fetal and adult brain. Also detected in fetal liver and skeletal muscle, but not in their adult counterparts.
KEGG Pathway
p53 sig.ling pathway (hsa04115 )
Reactome Pathway
Transcriptional regulation by RUNX2 (R-HSA-8878166 )

Molecular Interaction Atlas (MIA) of This DOT

3 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Syndromic intellectual disability DISH7SDF Definitive Autosomal dominant [1]
Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold DISHX5R0 Strong Autosomal dominant [2]
Hereditary breast carcinoma DISAEZT5 Disputed Autosomal dominant [3]
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Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
35 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the expression of Protein phosphatase 1D (PPM1D). [4]
Tretinoin DM49DUI Approved Tretinoin increases the expression of Protein phosphatase 1D (PPM1D). [5]
Acetaminophen DMUIE76 Approved Acetaminophen increases the expression of Protein phosphatase 1D (PPM1D). [6]
Doxorubicin DMVP5YE Approved Doxorubicin increases the expression of Protein phosphatase 1D (PPM1D). [7]
Cisplatin DMRHGI9 Approved Cisplatin increases the expression of Protein phosphatase 1D (PPM1D). [8]
Estradiol DMUNTE3 Approved Estradiol increases the expression of Protein phosphatase 1D (PPM1D). [9]
Quercetin DM3NC4M Approved Quercetin increases the expression of Protein phosphatase 1D (PPM1D). [11]
Arsenic trioxide DM61TA4 Approved Arsenic trioxide decreases the expression of Protein phosphatase 1D (PPM1D). [12]
Hydrogen peroxide DM1NG5W Approved Hydrogen peroxide increases the expression of Protein phosphatase 1D (PPM1D). [13]
Testosterone DM7HUNW Approved Testosterone decreases the expression of Protein phosphatase 1D (PPM1D). [14]
Decitabine DMQL8XJ Approved Decitabine increases the expression of Protein phosphatase 1D (PPM1D). [15]
Menadione DMSJDTY Approved Menadione increases the expression of Protein phosphatase 1D (PPM1D). [13]
Fluorouracil DMUM7HZ Approved Fluorouracil increases the expression of Protein phosphatase 1D (PPM1D). [16]
Fulvestrant DM0YZC6 Approved Fulvestrant decreases the expression of Protein phosphatase 1D (PPM1D). [9]
Demecolcine DMCZQGK Approved Demecolcine increases the expression of Protein phosphatase 1D (PPM1D). [17]
Hydroquinone DM6AVR4 Approved Hydroquinone increases the expression of Protein phosphatase 1D (PPM1D). [18]
Rosiglitazone DMILWZR Approved Rosiglitazone increases the expression of Protein phosphatase 1D (PPM1D). [19]
Etoposide DMNH3PG Approved Etoposide increases the expression of Protein phosphatase 1D (PPM1D). [20]
Irinotecan DMP6SC2 Approved Irinotecan increases the expression of Protein phosphatase 1D (PPM1D). [21]
Ifosfamide DMCT3I8 Approved Ifosfamide decreases the expression of Protein phosphatase 1D (PPM1D). [19]
Clodronate DM9Y6X7 Approved Clodronate decreases the expression of Protein phosphatase 1D (PPM1D). [19]
Colchicine DM2POTE Approved Colchicine decreases the expression of Protein phosphatase 1D (PPM1D). [22]
Hydroxyurea DMOQVU9 Approved Hydroxyurea increases the expression of Protein phosphatase 1D (PPM1D). [22]
Adefovir dipivoxil DMMAWY1 Approved Adefovir dipivoxil increases the expression of Protein phosphatase 1D (PPM1D). [19]
Adenine DMZLHKJ Approved Adenine decreases the expression of Protein phosphatase 1D (PPM1D). [22]
Nitric Oxide DM1RBYG Approved Nitric Oxide increases the expression of Protein phosphatase 1D (PPM1D). [23]
Dihydrotestosterone DM3S8XC Phase 4 Dihydrotestosterone increases the expression of Protein phosphatase 1D (PPM1D). [24]
Phenol DM1QSM3 Phase 2/3 Phenol increases the expression of Protein phosphatase 1D (PPM1D). [25]
Afimoxifene DMFORDT Phase 2 Afimoxifene decreases the expression of Protein phosphatase 1D (PPM1D). [9]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene increases the expression of Protein phosphatase 1D (PPM1D). [26]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of Protein phosphatase 1D (PPM1D). [27]
EMODIN DMAEDQG Terminated EMODIN increases the expression of Protein phosphatase 1D (PPM1D). [29]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the expression of Protein phosphatase 1D (PPM1D). [30]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Protein phosphatase 1D (PPM1D). [31]
3R14S-OCHRATOXIN A DM2KEW6 Investigative 3R14S-OCHRATOXIN A increases the expression of Protein phosphatase 1D (PPM1D). [32]
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⏷ Show the Full List of 35 Drug(s)
3 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Arsenic DMTL2Y1 Approved Arsenic affects the methylation of Protein phosphatase 1D (PPM1D). [10]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 increases the phosphorylation of Protein phosphatase 1D (PPM1D). [28]
Coumarin DM0N8ZM Investigative Coumarin affects the phosphorylation of Protein phosphatase 1D (PPM1D). [28]
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References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 De Novo Truncating Mutations in the Last and Penultimate Exons of PPM1D Cause an Intellectual Disability Syndrome. Am J Hum Genet. 2017 Apr 6;100(4):650-658. doi: 10.1016/j.ajhg.2017.02.005. Epub 2017 Mar 23.
3 Classification of Genes: Standardized Clinical Validity Assessment of Gene-Disease Associations Aids Diagnostic Exome Analysis and Reclassifications. Hum Mutat. 2017 May;38(5):600-608. doi: 10.1002/humu.23183. Epub 2017 Feb 13.
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5 Phenotypic characterization of retinoic acid differentiated SH-SY5Y cells by transcriptional profiling. PLoS One. 2013 May 28;8(5):e63862.
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7 Exploring pradimicin-IRD antineoplastic mechanisms and related DNA repair pathways. Chem Biol Interact. 2023 Feb 1;371:110342. doi: 10.1016/j.cbi.2023.110342. Epub 2023 Jan 10.
8 p53 hypersensitivity is the predominant mechanism of the unique responsiveness of testicular germ cell tumor (TGCT) cells to cisplatin. PLoS One. 2011 Apr 21;6(4):e19198. doi: 10.1371/journal.pone.0019198.
9 Comparative gene expression profiling reveals partially overlapping but distinct genomic actions of different antiestrogens in human breast cancer cells. J Cell Biochem. 2006 Aug 1;98(5):1163-84.
10 Prenatal arsenic exposure and the epigenome: identifying sites of 5-methylcytosine alterations that predict functional changes in gene expression in newborn cord blood and subsequent birth outcomes. Toxicol Sci. 2015 Jan;143(1):97-106. doi: 10.1093/toxsci/kfu210. Epub 2014 Oct 10.
11 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
12 microRNA expression alteration after arsenic trioxide treatment in HepG-2 cells. J Gastroenterol Hepatol. 2011 Jan;26(1):186-93. doi: 10.1111/j.1440-1746.2010.06317.x.
13 Gene expression after treatment with hydrogen peroxide, menadione, or t-butyl hydroperoxide in breast cancer cells. Cancer Res. 2002 Nov 1;62(21):6246-54.
14 The exosome-like vesicles derived from androgen exposed-prostate stromal cells promote epithelial cells proliferation and epithelial-mesenchymal transition. Toxicol Appl Pharmacol. 2021 Jan 15;411:115384. doi: 10.1016/j.taap.2020.115384. Epub 2020 Dec 25.
15 Acute hypersensitivity of pluripotent testicular cancer-derived embryonal carcinoma to low-dose 5-aza deoxycytidine is associated with global DNA Damage-associated p53 activation, anti-pluripotency and DNA demethylation. PLoS One. 2012;7(12):e53003. doi: 10.1371/journal.pone.0053003. Epub 2012 Dec 27.
16 Apoptosis, cell cycle progression and gene expression in TP53-depleted HCT116 colon cancer cells in response to short-term 5-fluorouracil treatment. Int J Oncol. 2007 Dec;31(6):1491-500.
17 Characterization of formaldehyde's genotoxic mode of action by gene expression analysis in TK6 cells. Arch Toxicol. 2013 Nov;87(11):1999-2012.
18 In vitro effects of aldehydes present in tobacco smoke on gene expression in human lung alveolar epithelial cells. Toxicol In Vitro. 2013 Apr;27(3):1072-81.
19 Transcriptomics hit the target: monitoring of ligand-activated and stress response pathways for chemical testing. Toxicol In Vitro. 2015 Dec 25;30(1 Pt A):7-18.
20 Profiling dose-dependent activation of p53-mediated signaling pathways by chemicals with distinct mechanisms of DNA damage. Toxicol Sci. 2014 Nov;142(1):56-73. doi: 10.1093/toxsci/kfu153. Epub 2014 Jul 30.
21 Clinical determinants of response to irinotecan-based therapy derived from cell line models. Clin Cancer Res. 2008 Oct 15;14(20):6647-55.
22 Utilization of CDKN1A/p21 gene for class discrimination of DNA damage-induced clastogenicity. Toxicology. 2014 Jan 6;315:8-16. doi: 10.1016/j.tox.2013.10.009. Epub 2013 Nov 6.
23 Apoptotic signaling pathways induced by nitric oxide in human lymphoblastoid cells expressing wild-type or mutant p53. Cancer Res. 2004 May 1;64(9):3022-9. doi: 10.1158/0008-5472.can-03-1880.
24 LSD1 activates a lethal prostate cancer gene network independently of its demethylase function. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4179-E4188.
25 Classification of heavy-metal toxicity by human DNA microarray analysis. Environ Sci Technol. 2007 May 15;41(10):3769-74.
26 Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010 May;115(1):66-79.
27 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
28 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
29 Gene expression alteration during redox-dependent enhancement of arsenic cytotoxicity by emodin in HeLa cells. Cell Res. 2005 Jul;15(7):511-22.
30 Quercetin and Its Fermented Extract as a Potential Inhibitor of Bisphenol A-Exposed HT-29 Colon Cancer Cells' Viability. Int J Mol Sci. 2023 Mar 15;24(6):5604. doi: 10.3390/ijms24065604.
31 Gene expression changes in primary human nasal epithelial cells exposed to formaldehyde in vitro. Toxicol Lett. 2010 Oct 5;198(2):289-95.
32 Persistence of epigenomic effects after recovery from repeated treatment with two nephrocarcinogens. Front Genet. 2018 Dec 3;9:558.