General Information of Drug Off-Target (DOT) (ID: OTGEU8IK)

DOT Name Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1)
Synonyms EC 1.2.4.1; PDHE1-A type I
Gene Name PDHA1
Related Disease
Leigh syndrome ( )
Pyruvate dehydrogenase complex deficiency ( )
Pyruvate dehydrogenase E1-alpha deficiency ( )
Advanced cancer ( )
Carcinoma of esophagus ( )
Cerebellar ataxia ( )
Cerebral palsy ( )
Cholangiocarcinoma ( )
Chromosomal disorder ( )
Coffin-Lowry syndrome ( )
Dystonia ( )
Epilepsy ( )
Esophageal cancer ( )
Esophageal squamous cell carcinoma ( )
Gastric neoplasm ( )
Hereditary diffuse gastric adenocarcinoma ( )
Inborn error of metabolism ( )
Mitochondrial disease ( )
Myocardial ischemia ( )
Neoplasm ( )
Neoplasm of esophagus ( )
Prostate cancer ( )
West syndrome ( )
Arthrogryposis ( )
Carcinoma ( )
Fetal akinesia deformation sequence 1 ( )
Head-neck squamous cell carcinoma ( )
Hepatocellular carcinoma ( )
Lactic acidosis ( )
Movement disorder ( )
Prostate carcinoma ( )
Obsolete Leigh syndrome with leukodystrophy ( )
Gastric cancer ( )
Lewy body dementia ( )
Osteoarthritis ( )
Parkinson disease ( )
Prostate neoplasm ( )
Stomach cancer ( )
UniProt ID
ODPA_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
1NI4; 2OZL; 3EXE; 3EXF; 3EXG; 3EXH; 3EXI; 6CER; 6CFO
EC Number
1.2.4.1
Pfam ID
PF00676
Sequence
MRKMLAAVSRVLSGASQKPASRVLVASRNFANDATFEIKKCDLHRLEEGPPVTTVLTRED
GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA
HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALA
CKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAAST
DYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVS
YRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPP
LEELGYHIYSSDPPFEVRGANQWIKFKSVS
Function The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and thereby links the glycolytic pathway to the tricarboxylic cycle.
Tissue Specificity Ubiquitous.
KEGG Pathway
Glycolysis / Gluconeogenesis (hsa00010 )
Citrate cycle (TCA cycle) (hsa00020 )
Pyruvate metabolism (hsa00620 )
Lipoic acid metabolism (hsa00785 )
Metabolic pathways (hsa01100 )
Carbon metabolism (hsa01200 )
2-Oxocarboxylic acid metabolism (hsa01210 )
HIF-1 sig.ling pathway (hsa04066 )
Glucagon sig.ling pathway (hsa04922 )
Central carbon metabolism in cancer (hsa05230 )
Diabetic cardiomyopathy (hsa05415 )
Reactome Pathway
Glyoxylate metabolism and glycine degradation (R-HSA-389661 )
Signaling by Retinoic Acid (R-HSA-5362517 )
Pyruvate metabolism (R-HSA-70268 )
Regulation of pyruvate dehydrogenase (PDH) complex (R-HSA-204174 )
BioCyc Pathway
MetaCyc:HS05573-MONOMER

Molecular Interaction Atlas (MIA) of This DOT

38 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Leigh syndrome DISWQU45 Definitive X-linked [1]
Pyruvate dehydrogenase complex deficiency DIS8RZP9 Definitive Biomarker [2]
Pyruvate dehydrogenase E1-alpha deficiency DISZ6WMJ Definitive X-linked [3]
Advanced cancer DISAT1Z9 Strong Altered Expression [4]
Carcinoma of esophagus DISS6G4D Strong Biomarker [5]
Cerebellar ataxia DIS9IRAV Strong Genetic Variation [6]
Cerebral palsy DIS82ODL Strong Biomarker [7]
Cholangiocarcinoma DIS71F6X Strong Biomarker [8]
Chromosomal disorder DISM5BB5 Strong Genetic Variation [9]
Coffin-Lowry syndrome DISMTBDA Strong Genetic Variation [10]
Dystonia DISJLFGW Strong Biomarker [11]
Epilepsy DISBB28L Strong Biomarker [2]
Esophageal cancer DISGB2VN Strong Biomarker [5]
Esophageal squamous cell carcinoma DIS5N2GV Strong Altered Expression [5]
Gastric neoplasm DISOKN4Y Strong Biomarker [12]
Hereditary diffuse gastric adenocarcinoma DISUIBYS Strong Biomarker [12]
Inborn error of metabolism DISO5FAY Strong Genetic Variation [13]
Mitochondrial disease DISKAHA3 Strong Genetic Variation [14]
Myocardial ischemia DISFTVXF Strong Biomarker [15]
Neoplasm DISZKGEW Strong Biomarker [16]
Neoplasm of esophagus DISOLKAQ Strong Biomarker [5]
Prostate cancer DISF190Y Strong Biomarker [16]
West syndrome DISLIAU9 Strong Genetic Variation [14]
Arthrogryposis DISC81CM moderate Genetic Variation [17]
Carcinoma DISH9F1N moderate Altered Expression [18]
Fetal akinesia deformation sequence 1 DISKDI9L moderate Genetic Variation [17]
Head-neck squamous cell carcinoma DISF7P24 moderate Biomarker [19]
Hepatocellular carcinoma DIS0J828 moderate Altered Expression [20]
Lactic acidosis DISZI1ZK moderate Genetic Variation [21]
Movement disorder DISOJJ2D moderate Genetic Variation [22]
Prostate carcinoma DISMJPLE moderate Biomarker [16]
Obsolete Leigh syndrome with leukodystrophy DISABU9D Supportive Autosomal recessive [23]
Gastric cancer DISXGOUK Limited Biomarker [24]
Lewy body dementia DISAE66J Limited Biomarker [25]
Osteoarthritis DIS05URM Limited Biomarker [26]
Parkinson disease DISQVHKL Limited Biomarker [25]
Prostate neoplasm DISHDKGQ Limited Altered Expression [16]
Stomach cancer DISKIJSX Limited Biomarker [24]
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⏷ Show the Full List of 38 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
18 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [27]
Tretinoin DM49DUI Approved Tretinoin decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [28]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [29]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [30]
Ivermectin DMDBX5F Approved Ivermectin decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [31]
Temozolomide DMKECZD Approved Temozolomide increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [32]
Arsenic trioxide DM61TA4 Approved Arsenic trioxide increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [33]
Triclosan DMZUR4N Approved Triclosan decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [34]
Dexamethasone DMMWZET Approved Dexamethasone increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [35]
Isotretinoin DM4QTBN Approved Isotretinoin decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [36]
Sodium lauryl sulfate DMLJ634 Approved Sodium lauryl sulfate decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [37]
Resveratrol DM3RWXL Phase 3 Resveratrol decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [38]
Epigallocatechin gallate DMCGWBJ Phase 3 Epigallocatechin gallate decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [39]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [42]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [43]
methyl p-hydroxybenzoate DMO58UW Investigative methyl p-hydroxybenzoate increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [44]
KOJIC ACID DMP84CS Investigative KOJIC ACID increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [45]
Okadaic acid DM47CO1 Investigative Okadaic acid increases the expression of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [46]
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⏷ Show the Full List of 18 Drug(s)
2 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene affects the methylation of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [40]
AZD-7545 DMU6L4I Terminated AZD-7545 decreases the phosphorylation of Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial (PDHA1). [41]
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References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 Pyruvate dehydrogenase complex deficiency and its relationship with epilepsy frequency--An overview.Epilepsy Res. 2015 Oct;116:40-52. doi: 10.1016/j.eplepsyres.2015.07.002. Epub 2015 Jul 8.
3 Pyruvate dehydrogenase E1 alpha deficiency in a family: different clinical presentation in two siblings. J Inherit Metab Dis. 1998 Jun;21(3):224-6. doi: 10.1023/a:1005347501111.
4 miR?1?p targets PDHA1 to regulate glycolysis and cancer progression in gastric cancer.Oncol Rep. 2018 Nov;40(5):2955-2963. doi: 10.3892/or.2018.6695. Epub 2018 Sep 10.
5 PDHA1 Gene Knockout In Human Esophageal Squamous Cancer Cells Resulted In Greater Warburg Effect And Aggressive Features In Vitro And In Vivo.Onco Targets Ther. 2019 Nov 18;12:9899-9913. doi: 10.2147/OTT.S226851. eCollection 2019.
6 Genetic and clinical features of Chinese patients with mitochondrial ataxia identified by targeted next-generation sequencing.CNS Neurosci Ther. 2019 Jan;25(1):21-29. doi: 10.1111/cns.12972. Epub 2018 May 13.
7 The genetic etiology in cerebral palsy mimics: The results from a Greek tertiary care center.Eur J Paediatr Neurol. 2019 May;23(3):427-437. doi: 10.1016/j.ejpn.2019.02.001. Epub 2019 Feb 14.
8 SIRT3 elicited an anti-Warburg effect through HIF1/PDK1/PDHA1 to inhibit cholangiocarcinoma tumorigenesis.Cancer Med. 2019 May;8(5):2380-2391. doi: 10.1002/cam4.2089. Epub 2019 Apr 16.
9 Deletion at chromosomal band Xp22.12-Xp22.13 involving PDHA1 in a patient with congenital lactic acidosis.Mol Genet Metab. 2010 Sep;101(1):87-9. doi: 10.1016/j.ymgme.2010.05.008. Epub 2010 Jun 11.
10 Mouse mutants carrying deletions that remove the genes mutated in Coffin-Lowry syndrome and lactic acidosis.Hum Mol Genet. 1998 Mar;7(3):549-55. doi: 10.1093/hmg/7.3.549.
11 Pyruvate dehydrogenase deficiency presenting as dystonia in childhood.Dev Med Child Neurol. 2004 Oct;46(10):710-2. doi: 10.1017/s0012162204001197.
12 A gene expression signature of acquired chemoresistance to cisplatin and fluorouracil combination chemotherapy in gastric cancer patients.PLoS One. 2011 Feb 18;6(2):e16694. doi: 10.1371/journal.pone.0016694.
13 Mild phenotype in a male with pyruvate dehydrogenase complex deficiency associated with novel hemizygous in-frame duplication of the E1 subunit gene (PDHA1).Neuropediatrics. 2014 Feb;45(1):56-60. doi: 10.1055/s-0033-1341601. Epub 2013 Apr 9.
14 A 1.1 million base pair X-chromosomal deletion covering the PDHA1 and CDKL5 genes in a female patient with West syndrome and pyruvate oxidation deficiency.Neuropediatrics. 2012 Jun;43(3):130-4. doi: 10.1055/s-0032-1309308. Epub 2012 Apr 2.
15 Cardioplegia prevents ischemia-induced transcriptional alterations of cytoprotective genes in rat hearts: a DNA microarray study.J Thorac Cardiovasc Surg. 2005 Oct;130(4):1151. doi: 10.1016/j.jtcvs.2005.06.027.
16 Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer.Nat Genet. 2018 Feb;50(2):219-228. doi: 10.1038/s41588-017-0026-3. Epub 2018 Jan 15.
17 Massive parallel sequencing identifies RAPSN and PDHA1 mutations causing fetal akinesia deformation sequence.Eur J Paediatr Neurol. 2017 Sep;21(5):745-753. doi: 10.1016/j.ejpn.2017.04.641. Epub 2017 Apr 26.
18 Pyruvate dehydrogenase expression is negatively associated with cell stemness and worse clinical outcome in prostate cancers.Oncotarget. 2017 Feb 21;8(8):13344-13356. doi: 10.18632/oncotarget.14527.
19 Determination of Pyruvate Metabolic Fates Modulates Head and Neck Tumorigenesis.Neoplasia. 2019 Jul;21(7):641-652. doi: 10.1016/j.neo.2019.04.007. Epub 2019 May 14.
20 Overexpression of Pyruvate Dehydrogenase E1 Subunit Inhibits Warburg Effect and Induces Cell Apoptosis Through Mitochondria-Mediated Pathway in Hepatocellular Carcinoma.Oncol Res. 2019 Mar 29;27(4):407-414. doi: 10.3727/096504018X15180451872087. Epub 2018 Feb 14.
21 Enzymatic testing sensitivity, variability and practical diagnostic algorithm for pyruvate dehydrogenase complex (PDC) deficiency.Mol Genet Metab. 2017 Nov;122(3):61-66. doi: 10.1016/j.ymgme.2017.09.001. Epub 2017 Sep 8.
22 Detection and Quantification of Mosaic Mutations in Disease Genes by Next-Generation Sequencing.J Mol Diagn. 2016 May;18(3):446-453. doi: 10.1016/j.jmoldx.2016.01.002. Epub 2016 Mar 2.
23 Molecular genetic characterization of an X-linked form of Leigh's syndrome. Ann Neurol. 1993 Jun;33(6):652-5. doi: 10.1002/ana.410330616.
24 Low expression of PDHA1 predicts poor prognosis in gastric cancer.Pathol Res Pract. 2019 Mar;215(3):478-482. doi: 10.1016/j.prp.2018.12.038. Epub 2018 Dec 31.
25 Alteration of mitochondrial protein PDHA1 in Lewy body disease and PARK14.Biochem Biophys Res Commun. 2017 Aug 5;489(4):439-444. doi: 10.1016/j.bbrc.2017.05.162. Epub 2017 May 28.
26 Mitochondrial dysregulation of osteoarthritic human articular chondrocytes analyzed by proteomics: a decrease in mitochondrial superoxide dismutase points to a redox imbalance.Mol Cell Proteomics. 2009 Jan;8(1):172-89. doi: 10.1074/mcp.M800292-MCP200. Epub 2008 Sep 9.
27 Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol. 2013 Jan;87(1):123-43.
28 Development of a neural teratogenicity test based on human embryonic stem cells: response to retinoic acid exposure. Toxicol Sci. 2011 Dec;124(2):370-7.
29 Increased mitochondrial ROS formation by acetaminophen in human hepatic cells is associated with gene expression changes suggesting disruption of the mitochondrial electron transport chain. Toxicol Lett. 2015 Apr 16;234(2):139-50.
30 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
31 Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment. J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
32 Temozolomide induces activation of Wnt/-catenin signaling in glioma cells via PI3K/Akt pathway: implications in glioma therapy. Cell Biol Toxicol. 2020 Jun;36(3):273-278. doi: 10.1007/s10565-019-09502-7. Epub 2019 Nov 22.
33 Chronic occupational exposure to arsenic induces carcinogenic gene signaling networks and neoplastic transformation in human lung epithelial cells. Toxicol Appl Pharmacol. 2012 Jun 1;261(2):204-16.
34 Transcriptome and DNA methylome dynamics during triclosan-induced cardiomyocyte differentiation toxicity. Stem Cells Int. 2018 Oct 29;2018:8608327.
35 Identification of mechanisms of action of bisphenol a-induced human preadipocyte differentiation by transcriptional profiling. Obesity (Silver Spring). 2014 Nov;22(11):2333-43.
36 Temporal changes in gene expression in the skin of patients treated with isotretinoin provide insight into its mechanism of action. Dermatoendocrinol. 2009 May;1(3):177-87.
37 Identification of potential biomarkers for predicting acute dermal irritation by proteomic analysis. J Appl Toxicol. 2011 Nov;31(8):762-72.
38 Resveratrol-induced cell growth inhibition and apoptosis is associated with modulation of phosphoglycerate mutase B in human prostate cancer cells: two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis and mass spectrometry evaluation. Cancer Detect Prev. 2004;28(6):443-52. doi: 10.1016/j.cdp.2004.08.009.
39 Epigallocatechin-3-gallate downregulates PDHA1 interfering the metabolic pathways in human herpesvirus 8 harboring primary effusion lymphoma cells. Toxicol In Vitro. 2020 Jun;65:104753. doi: 10.1016/j.tiv.2019.104753. Epub 2019 Dec 17.
40 Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study. Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.
41 VER-246608, a novel pan-isoform ATP competitive inhibitor of pyruvate dehydrogenase kinase, disrupts Warburg metabolism and induces context-dependent cytostasis in cancer cells. Oncotarget. 2014 Dec 30;5(24):12862-76. doi: 10.18632/oncotarget.2656.
42 Bisphenol A induces DSB-ATM-p53 signaling leading to cell cycle arrest, senescence, autophagy, stress response, and estrogen release in human fetal lung fibroblasts. Arch Toxicol. 2018 Apr;92(4):1453-1469.
43 Characterization of formaldehyde's genotoxic mode of action by gene expression analysis in TK6 cells. Arch Toxicol. 2013 Nov;87(11):1999-2012.
44 Transcriptome dynamics of alternative splicing events revealed early phase of apoptosis induced by methylparaben in H1299 human lung carcinoma cells. Arch Toxicol. 2020 Jan;94(1):127-140. doi: 10.1007/s00204-019-02629-w. Epub 2019 Nov 20.
45 Toxicogenomics of kojic acid on gene expression profiling of a375 human malignant melanoma cells. Biol Pharm Bull. 2006 Apr;29(4):655-69.
46 Whole genome mRNA transcriptomics analysis reveals different modes of action of the diarrheic shellfish poisons okadaic acid and dinophysis toxin-1 versus azaspiracid-1 in Caco-2 cells. Toxicol In Vitro. 2018 Feb;46:102-112.