General Information of Drug Off-Target (DOT) (ID: OTHNIZWZ)

DOT Name Chromodomain-helicase-DNA-binding protein 7 (CHD7)
Synonyms CHD-7; EC 3.6.4.12; ATP-dependent helicase CHD7
Gene Name CHD7
Related Disease
CHARGE syndrome ( )
Adult glioblastoma ( )
Advanced cancer ( )
Autism spectrum disorder ( )
Breast carcinoma ( )
Deafness ( )
DiGeorge syndrome ( )
Ear malformation ( )
Glioblastoma multiforme ( )
Hypogonadism ( )
Hypogonadotropic hypogonadism 5 with or without anosmia ( )
Hypogonadotropic hypogonadism 7 with or without anosmia ( )
Immunodeficiency ( )
Intellectual disability ( )
Isolated cleft palate ( )
Major depressive disorder ( )
Microphthalmia ( )
Myopathy ( )
Neoplasm ( )
Prostate cancer ( )
Prostate neoplasm ( )
Sensorineural hearing loss disorder ( )
Severe combined immunodeficiency ( )
Shprintzen-Goldberg syndrome ( )
Vesicoureteral reflux ( )
Cryptorchidism ( )
Movement disorder ( )
Rheumatoid arthritis ( )
Hypogonadotropic hypogonadism ( )
Kallmann syndrome ( )
Omenn syndrome ( )
Autism ( )
Chromosomal disorder ( )
Cleft lip/palate ( )
Coloboma ( )
Congenital hypogonadotropic hypogonadism ( )
Gastroesophageal reflux disease ( )
Hypothyroidism ( )
Klinefelter syndrome ( )
UniProt ID
CHD7_HUMAN
PDB ID
2CKC; 2V0E; 2V0F
EC Number
3.6.4.12
Pfam ID
PF07533 ; PF00385 ; PF00271 ; PF00176
Sequence
MADPGMMSLFGEDGNIFSEGLEGLGECGYPENPVNPMGQQMPIDQGFASLQPSLHHPSTN
QNQTKLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGG
GQMGVYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQ
GHPQHMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ
QSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVP
SPTINNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQG
LMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGI
PMEVGSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGC
PGVGLGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQL
HPSPQNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKK
KKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPK
EKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEASALKKKVNKGKTE
GSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEEADDADAAGR
DSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFYVKYKNFSYLHCQW
ASIEDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEP
VTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLMSREPETERVERPPADDWKKSESSR
EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL
VIAPLSTIPNWEREFRTWTELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAI
ITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNT
VEELFSLLHFLEPSRFPSETTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP
KEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLING
AEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLD
ILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADT
CIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQ
SMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLRRTHTITI
ESEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRK
QTRLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGR
WTDILSHGRYKRQLTEQDVETICRTILVYCLNHYKGDENIKSFIWDLITPTADGQTRALV
NHSGLSAPVPRGRKGKKVKAQSTQPVVQDADWLASCNPDALFQEDSYKKHLKHHCNKVLL
RVRMLYYLRQEVIGDQADKILEGADSSEADVWIPEPFHAEVPADWWDKEADKSLLIGVFK
HGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPT
RTPFKDEIDEFANSPSEDKEESMEIHATGKHSESNAELGQLYWPNTSTLTTRLRRLITAY
QRSYKRQQMRQEALMKTDRRRRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVST
FGVIFDPVKQQFDWNQFRAFARLDKKSDESLEKYFSCFVAMCRRVCRMPVKPDDEPPDLS
SIIEPITEERASRTLYRIELLRKIREQVLHHPQLGERLKLCQPSLDLPEWWECGRHDRDL
LVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPLAVGFVQTPPVISSA
HIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECEAEASSVKNELKG
VEVGADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTAR
DETRDGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQMF
DFQGLIPGYTPTTVDSPLQKRSFAELSMVGQASISGSEDITTSPQLSKEDALNLSVPRQR
RRRRRKIEIEAERAAKRRNLMEMVAQLRESQVVSENGQEKVVDLSKASREATSSTSNFSS
LSSKFILPNVSTPVSDAFKTQMELLQAGLSRTPTRHLLNGSLVDGEPPMKRRRGRRKNVE
GLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQLDPDTRIPVINLEDGTRL
VGEDAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPNKLDINT
LTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTDIVKQSGFVPESMF
DRLLTGPVVRGEGASRRGRRPKSEIARAAAAAAAVASTSGINPLLVNSLFAGMDLTSLQN
LQNLQSLQLAGLMGFPPGLATAATAGGDAKNPAAVLPLMLPGMAGLPNVFGLGGLLNNPL
SAATGNTTTASSQGEPEDSTSKGEEKGNENEDENKDSEKSTDAVSAADSANGSVGAATAP
AGLPSNPLAFNPFLLSTMAPGLFYPSMFLPPGLGGLTLPGFPALAGLQNAVGSSEEKAAD
KAEGGPFKDGETLEGSDAEESLDKTAESSLLEDEIAQGEELDSLDGGDEIENNENDE
Function Probable transcription regulator. Maybe involved in the in 45S precursor rRNA production.
Tissue Specificity Widely expressed in fetal and adult tissues.

Molecular Interaction Atlas (MIA) of This DOT

39 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
CHARGE syndrome DISKD3CW Definitive Autosomal dominant [1]
Adult glioblastoma DISVP4LU Strong Altered Expression [2]
Advanced cancer DISAT1Z9 Strong Biomarker [3]
Autism spectrum disorder DISXK8NV Strong Biomarker [4]
Breast carcinoma DIS2UE88 Strong Altered Expression [5]
Deafness DISKCLH4 Strong Biomarker [6]
DiGeorge syndrome DIST1RKO Strong Genetic Variation [7]
Ear malformation DISVJGPS Strong Genetic Variation [8]
Glioblastoma multiforme DISK8246 Strong Altered Expression [2]
Hypogonadism DISICMNI Strong Genetic Variation [9]
Hypogonadotropic hypogonadism 5 with or without anosmia DISRB12X Strong Autosomal dominant [10]
Hypogonadotropic hypogonadism 7 with or without anosmia DISPBWEU Strong Genetic Variation [11]
Immunodeficiency DIS093I0 Strong Biomarker [12]
Intellectual disability DISMBNXP Strong Biomarker [4]
Isolated cleft palate DISV80CD Strong Biomarker [13]
Major depressive disorder DIS4CL3X Strong Genetic Variation [14]
Microphthalmia DISGEBES Strong Genetic Variation [15]
Myopathy DISOWG27 Strong Biomarker [16]
Neoplasm DISZKGEW Strong Biomarker [2]
Prostate cancer DISF190Y Strong Biomarker [17]
Prostate neoplasm DISHDKGQ Strong Biomarker [17]
Sensorineural hearing loss disorder DISJV45Z Strong Genetic Variation [18]
Severe combined immunodeficiency DIS6MF4Q Strong Genetic Variation [19]
Shprintzen-Goldberg syndrome DISQH6P3 Strong Genetic Variation [7]
Vesicoureteral reflux DISUL6SA Strong Genetic Variation [20]
Cryptorchidism DISYUD2P moderate Genetic Variation [21]
Movement disorder DISOJJ2D moderate CausalMutation [22]
Rheumatoid arthritis DISTSB4J moderate Altered Expression [23]
Hypogonadotropic hypogonadism DIS8JSKR Supportive Autosomal dominant [10]
Kallmann syndrome DISO3HDG Supportive Autosomal dominant [10]
Omenn syndrome DIS2C887 Supportive Autosomal recessive [24]
Autism DISV4V1Z Limited Genetic Variation [22]
Chromosomal disorder DISM5BB5 Limited Biomarker [25]
Cleft lip/palate DIS14IG3 Limited Genetic Variation [26]
Coloboma DISP39N5 Limited Genetic Variation [27]
Congenital hypogonadotropic hypogonadism DISEV092 Limited Genetic Variation [8]
Gastroesophageal reflux disease DISQ8G5S Limited Genetic Variation [11]
Hypothyroidism DISR0H6D Limited Genetic Variation [28]
Klinefelter syndrome DISOUI7W Limited Altered Expression [29]
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⏷ Show the Full List of 39 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
5 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the methylation of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [30]
Quercetin DM3NC4M Approved Quercetin increases the phosphorylation of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [35]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 decreases the phosphorylation of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [35]
Bisphenol A DM2ZLD7 Investigative Bisphenol A increases the methylation of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [41]
Coumarin DM0N8ZM Investigative Coumarin affects the phosphorylation of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [35]
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10 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [31]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [32]
Cisplatin DMRHGI9 Approved Cisplatin decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [33]
Estradiol DMUNTE3 Approved Estradiol increases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [34]
Marinol DM70IK5 Approved Marinol increases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [36]
Dihydrotestosterone DM3S8XC Phase 4 Dihydrotestosterone increases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [37]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [38]
Leflunomide DMR8ONJ Phase 1 Trial Leflunomide increases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [39]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [40]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Chromodomain-helicase-DNA-binding protein 7 (CHD7). [42]
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⏷ Show the Full List of 10 Drug(s)

References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 CHD7 promotes glioblastoma cell motility and invasiveness through transcriptional modulation of an invasion signature.Sci Rep. 2019 Mar 8;9(1):3952. doi: 10.1038/s41598-019-39564-w.
3 miR-30 disrupts senescence and promotes cancer by targeting both p16(INK4A) and DNA damage pathways.Oncogene. 2018 Oct;37(42):5618-5632. doi: 10.1038/s41388-018-0358-1. Epub 2018 Jun 15.
4 Regulation of neuronal connectivity in the mammalian brain by chromatin remodeling.Curr Opin Neurobiol. 2019 Dec;59:59-68. doi: 10.1016/j.conb.2019.04.010. Epub 2019 May 28.
5 Genotranscriptomic meta-analysis of the CHD family chromatin remodelers in human cancers - initial evidence of an oncogenic role for CHD7.Mol Oncol. 2017 Oct;11(10):1348-1360. doi: 10.1002/1878-0261.12104. Epub 2017 Jul 21.
6 An intronic mutation in Chd7 creates a cryptic splice site, causing aberrant splicing in a mouse model of CHARGE syndrome.Sci Rep. 2018 Apr 3;8(1):5482. doi: 10.1038/s41598-018-23856-8.
7 Establishment of immunity against Epstein-Barr virus infection in a patient with CHARGE/complete DiGeorge syndrome after peripheral blood lymphocyte transfusion.Pediatr Transplant. 2019 Jun;23(4):e13424. doi: 10.1111/petr.13424. Epub 2019 Apr 29.
8 High frequency of CHD7 mutations in congenital hypogonadotropic hypogonadism.Sci Rep. 2019 Feb 7;9(1):1597. doi: 10.1038/s41598-018-38178-y.
9 Expanding the CHARGE Geno-Phenotype: A Girl with Novel CHD7 Deletion, Hypogonadotropic Hypogonadism, and Agenesis of Uterus and Ovaries.Horm Res Paediatr. 2016;85(4):288-90. doi: 10.1159/000443308. Epub 2016 Jan 8.
10 Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. Am J Hum Genet. 2008 Oct;83(4):511-9. doi: 10.1016/j.ajhg.2008.09.005. Epub 2008 Oct 2.
11 Phenotypic Spectrum of Idiopathic Hypogonadotropic Hypogonadism Patients With CHD7 Variants From a Large Chinese Cohort.J Clin Endocrinol Metab. 2020 May 1;105(5):dgz182. doi: 10.1210/clinem/dgz182.
12 Successful cord blood transplantation for a CHARGE syndrome with CHD7 mutation showing DiGeorge sequence including hypoparathyroidism.Eur J Pediatr. 2010 Jul;169(7):839-44. doi: 10.1007/s00431-009-1126-6. Epub 2010 Jan 6.
13 Craniofacial anomalies in twins.Plast Reconstr Surg. 1991 Jan;87(1):16-23. doi: 10.1097/00006534-199101000-00004.
14 Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.Neuropsychopharmacology. 2018 Sep;43(10):2146-2153. doi: 10.1038/s41386-018-0078-9. Epub 2018 Apr 27.
15 Identification of novel pathogenic variants and novel gene-phenotype correlations in Mexican subjects with microphthalmia and/or anophthalmia by next-generation sequencing.J Hum Genet. 2018 Nov;63(11):1169-1180. doi: 10.1038/s10038-018-0504-1. Epub 2018 Sep 4.
16 Prominent scapulae mimicking an inherited myopathy expands the phenotype of CHD7-related disease.Eur J Hum Genet. 2016 Aug;24(8):1216-9. doi: 10.1038/ejhg.2015.276. Epub 2016 Jan 27.
17 The long tail of oncogenic drivers in prostate cancer.Nat Genet. 2018 May;50(5):645-651. doi: 10.1038/s41588-018-0078-z. Epub 2018 Apr 2.
18 Comprehensive genomic diagnosis of non-syndromic and syndromic hereditary hearing loss in Spanish patients.BMC Med Genomics. 2018 Jul 9;11(1):58. doi: 10.1186/s12920-018-0375-5.
19 Disseminated BCG pneumonitis revealing severe combined immunodeficiencyxs in CHARGE syndrome.Pediatr Pulmonol. 2017 Feb;52(2):E4-E6. doi: 10.1002/ppul.23533. Epub 2016 Nov 22.
20 The CHARGE association and athyreosis.J Med Genet. 1991 Mar;28(3):207-8. doi: 10.1136/jmg.28.3.207.
21 Hypogonadism and CHARGE association.Am J Med Genet. 2000 Sep 18;94(3):228-31. doi: 10.1002/1096-8628(20000918)94:3<228::aid-ajmg8>3.0.co;2-h.
22 Atypical phenotypes associated with pathogenic CHD7 variants and a proposal for broadening CHARGE syndrome clinical diagnostic criteria.Am J Med Genet A. 2016 Feb;170A(2):344-354. doi: 10.1002/ajmg.a.37435. Epub 2015 Nov 21.
23 CHD7 represses the retinoic acid synthesis enzyme ALDH1A3 during inner ear development.JCI Insight. 2018 Feb 22;3(4):e97440. doi: 10.1172/jci.insight.97440. eCollection 2018 Feb 22.
24 Clinical Practice Guidelines for Rare Diseases: The Orphanet Database. PLoS One. 2017 Jan 18;12(1):e0170365. doi: 10.1371/journal.pone.0170365. eCollection 2017.
25 Increased paternal age in CHARGE association.Clin Genet. 1996 Dec;50(6):548-50. doi: 10.1111/j.1399-0004.1996.tb02736.x.
26 Molecular genetic and clinical delineation of 22 patients with congenital hypogonadotropic hypogonadism.J Pediatr Endocrinol Metab. 2017 Oct 26;30(10):1111-1118. doi: 10.1515/jpem-2017-0035.
27 Chromodomain Helicase DNA-Binding Protein 7 Is Suppressed in the Perinecrotic/Ischemic Microenvironment and Is a Novel Regulator of Glioblastoma Angiogenesis.Stem Cells. 2019 Apr;37(4):453-462. doi: 10.1002/stem.2969. Epub 2019 Jan 24.
28 Endocrine and radiological studies in patients with molecularly confirmed CHARGE syndrome.J Clin Endocrinol Metab. 2008 Mar;93(3):920-4. doi: 10.1210/jc.2007-1419. Epub 2007 Dec 18.
29 Sema3a plays a role in the pathogenesis of CHARGE syndrome.Hum Mol Genet. 2018 Apr 15;27(8):1343-1352. doi: 10.1093/hmg/ddy045.
30 Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
31 Gene expression analysis of precision-cut human liver slices indicates stable expression of ADME-Tox related genes. Toxicol Appl Pharmacol. 2011 May 15;253(1):57-69.
32 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
33 Low doses of cisplatin induce gene alterations, cell cycle arrest, and apoptosis in human promyelocytic leukemia cells. Biomark Insights. 2016 Aug 24;11:113-21.
34 17-Estradiol Activates HSF1 via MAPK Signaling in ER-Positive Breast Cancer Cells. Cancers (Basel). 2019 Oct 11;11(10):1533. doi: 10.3390/cancers11101533.
35 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
36 THC exposure of human iPSC neurons impacts genes associated with neuropsychiatric disorders. Transl Psychiatry. 2018 Apr 25;8(1):89. doi: 10.1038/s41398-018-0137-3.
37 LSD1 activates a lethal prostate cancer gene network independently of its demethylase function. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4179-E4188.
38 Transcriptional signature of human macrophages exposed to the environmental contaminant benzo(a)pyrene. Toxicol Sci. 2010 Apr;114(2):247-59.
39 Endoplasmic reticulum stress and MAPK signaling pathway activation underlie leflunomide-induced toxicity in HepG2 Cells. Toxicology. 2017 Dec 1;392:11-21.
40 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
41 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
42 Gene expression changes in primary human nasal epithelial cells exposed to formaldehyde in vitro. Toxicol Lett. 2010 Oct 5;198(2):289-95.