General Information of Drug Off-Target (DOT) (ID: OTNJBESF)

DOT Name Glypican-6 (GPC6)
Gene Name GPC6
Related Disease
Intervertebral disc degeneration ( )
Neurotic disorder ( )
Advanced cancer ( )
Alzheimer disease ( )
Attention deficit hyperactivity disorder ( )
Autosomal recessive omodysplasia ( )
Bone development disease ( )
Breast cancer ( )
Breast carcinoma ( )
Cardiovascular disease ( )
Colorectal carcinoma ( )
Congenital deformities of limbs ( )
Epithelial ovarian cancer ( )
Keipert syndrome ( )
Metastatic malignant neoplasm ( )
Metastatic melanoma ( )
Neoplasm ( )
Omodysplasia ( )
Osteoporosis ( )
Retinoblastoma ( )
Simpson-Golabi-Behmel syndrome ( )
Simpson-Golabi-Behmel syndrome type 1 ( )
Melanoma ( )
Schizophrenia ( )
UniProt ID
GPC6_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
Pfam ID
PF01153
Sequence
MPSWIGAVILPLLGLLLSLPAGADVKARSCGEVRQAYGAKGFSLADIPYQEIAGEHLRIC
PQEYTCCTTEMEDKLSQQSKLEFENLVEETSHFVRTTFVSRHKKFDEFFRELLENAEKSL
NDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVNLEEMLNDFWARLLERMFQLINPQY
HFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAARTFVQGLTVGREVANRVSKVSP
TPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKGCLANQADLDTEWNLFIDAMLLVAE
RLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPALRSARSAPENF
NTRFRPYNPEERPTTAAGTSLDRLVTDIKEKLKLSKKVWSALPYTICKDESVTAGTSNEE
ECWNGHSKARYLPEIMNDGLTNQINNPEVDVDITRPDTFIRQQIMALRVMTNKLKNAYNG
NDVNFQDTSDESSGSGSGSGCMDDVCPTEFEFVTTEAPAVDPDRREVDSSAAQRGHSLLS
WSLTCIVLALQRLCR
Function
Cell surface proteoglycan that bears heparan sulfate. Putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases. Enhances migration and invasion of cancer cells through WNT5A signaling.
Tissue Specificity
Widely expressed. High expression in fetal kidney and lung and lower expressions in fetal liver and brain. In adult tissues, very abundant in ovary, high levels also observed in liver, kidney, small intestine and colon. Not detected in peripheral blood leukocytes. Detected in breast cancer cells (at protein level).
Reactome Pathway
HS-GAG biosynthesis (R-HSA-2022928 )
HS-GAG degradation (R-HSA-2024096 )
Defective B4GALT7 causes EDS, progeroid type (R-HSA-3560783 )
Defective B3GAT3 causes JDSSDHD (R-HSA-3560801 )
Defective EXT2 causes exostoses 2 (R-HSA-3656237 )
Defective EXT1 causes exostoses 1, TRPS2 and CHDS (R-HSA-3656253 )
Defective B3GALT6 causes EDSP2 and SEMDJL1 (R-HSA-4420332 )
Attachment and Entry (R-HSA-9694614 )
Retinoid metabolism and transport (R-HSA-975634 )
A tetrasaccharide linker sequence is required for GAG synthesis (R-HSA-1971475 )

Molecular Interaction Atlas (MIA) of This DOT

24 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Intervertebral disc degeneration DISG3AIM Definitive Genetic Variation [1]
Neurotic disorder DIS1YCE9 Definitive Genetic Variation [2]
Advanced cancer DISAT1Z9 Strong Altered Expression [3]
Alzheimer disease DISF8S70 Strong Genetic Variation [4]
Attention deficit hyperactivity disorder DISL8MX9 Strong Genetic Variation [5]
Autosomal recessive omodysplasia DIS2E6PV Strong Autosomal recessive [6]
Bone development disease DISVKAZS Strong Biomarker [7]
Breast cancer DIS7DPX1 Strong Biomarker [8]
Breast carcinoma DIS2UE88 Strong Biomarker [8]
Cardiovascular disease DIS2IQDX Strong Biomarker [9]
Colorectal carcinoma DIS5PYL0 Strong Biomarker [3]
Congenital deformities of limbs DISP4N1Q Strong Biomarker [6]
Epithelial ovarian cancer DIS56MH2 Strong Genetic Variation [10]
Keipert syndrome DISJ7D7I Strong Biomarker [7]
Metastatic malignant neoplasm DIS86UK6 Strong Biomarker [11]
Metastatic melanoma DISSL43L Strong Altered Expression [11]
Neoplasm DISZKGEW Strong Altered Expression [11]
Omodysplasia DISREAME Strong Genetic Variation [12]
Osteoporosis DISF2JE0 Strong Biomarker [13]
Retinoblastoma DISVPNPB Strong Genetic Variation [14]
Simpson-Golabi-Behmel syndrome DIS9H9TY Strong Genetic Variation [12]
Simpson-Golabi-Behmel syndrome type 1 DISYV73N Strong Genetic Variation [12]
Melanoma DIS1RRCY Limited Biomarker [11]
Schizophrenia DISSRV2N Limited Genetic Variation [15]
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⏷ Show the Full List of 24 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
24 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the expression of Glypican-6 (GPC6). [16]
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of Glypican-6 (GPC6). [17]
Tretinoin DM49DUI Approved Tretinoin increases the expression of Glypican-6 (GPC6). [18]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Glypican-6 (GPC6). [19]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Glypican-6 (GPC6). [20]
Cisplatin DMRHGI9 Approved Cisplatin decreases the expression of Glypican-6 (GPC6). [21]
Quercetin DM3NC4M Approved Quercetin decreases the expression of Glypican-6 (GPC6). [23]
Arsenic trioxide DM61TA4 Approved Arsenic trioxide increases the expression of Glypican-6 (GPC6). [24]
Calcitriol DM8ZVJ7 Approved Calcitriol increases the expression of Glypican-6 (GPC6). [25]
Testosterone DM7HUNW Approved Testosterone decreases the expression of Glypican-6 (GPC6). [25]
Carbamazepine DMZOLBI Approved Carbamazepine affects the expression of Glypican-6 (GPC6). [26]
Decitabine DMQL8XJ Approved Decitabine affects the expression of Glypican-6 (GPC6). [27]
Panobinostat DM58WKG Approved Panobinostat decreases the expression of Glypican-6 (GPC6). [28]
Dexamethasone DMMWZET Approved Dexamethasone decreases the expression of Glypican-6 (GPC6). [29]
Diethylstilbestrol DMN3UXQ Approved Diethylstilbestrol increases the expression of Glypican-6 (GPC6). [30]
Dihydrotestosterone DM3S8XC Phase 4 Dihydrotestosterone increases the expression of Glypican-6 (GPC6). [31]
SNDX-275 DMH7W9X Phase 3 SNDX-275 decreases the expression of Glypican-6 (GPC6). [28]
Resveratrol DM3RWXL Phase 3 Resveratrol decreases the expression of Glypican-6 (GPC6). [32]
Belinostat DM6OC53 Phase 2 Belinostat decreases the expression of Glypican-6 (GPC6). [28]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene decreases the expression of Glypican-6 (GPC6). [17]
Leflunomide DMR8ONJ Phase 1 Trial Leflunomide increases the expression of Glypican-6 (GPC6). [33]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 decreases the expression of Glypican-6 (GPC6). [34]
Bisphenol A DM2ZLD7 Investigative Bisphenol A increases the expression of Glypican-6 (GPC6). [35]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of Glypican-6 (GPC6). [36]
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⏷ Show the Full List of 24 Drug(s)
1 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Arsenic DMTL2Y1 Approved Arsenic affects the methylation of Glypican-6 (GPC6). [22]
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References

1 Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects.Ann Rheum Dis. 2013 Jul;72(7):1141-8. doi: 10.1136/annrheumdis-2012-201551. Epub 2012 Sep 19.
2 A genome-wide association study of neuroticism in a population-based sample.PLoS One. 2010 Jul 9;5(7):e11504. doi: 10.1371/journal.pone.0011504.
3 DNA methylation changes in genes frequently mutated in sporadic colorectal cancer and in the DNA repair and Wnt/-catenin signaling pathway genes.Epigenomics. 2014 Apr;6(2):179-91. doi: 10.2217/epi.14.7.
4 Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.Alzheimers Dement. 2014 Jan;10(1):45-52. doi: 10.1016/j.jalz.2013.01.008. Epub 2013 Mar 25.
5 Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies.J Neural Transm (Vienna). 2008 Nov;115(11):1573-85. doi: 10.1007/s00702-008-0119-3. Epub 2008 Oct 7.
6 Mutations in the heparan-sulfate proteoglycan glypican 6 (GPC6) impair endochondral ossification and cause recessive omodysplasia. Am J Hum Genet. 2009 Jun;84(6):760-70. doi: 10.1016/j.ajhg.2009.05.002. Epub 2009 May 28.
7 Pathogenic Variants in GPC4 Cause Keipert Syndrome. Am J Hum Genet. 2019 May 2;104(5):914-924. doi: 10.1016/j.ajhg.2019.02.026. Epub 2019 Apr 11.
8 NFAT promotes carcinoma invasive migration through glypican-6.Biochem J. 2011 Nov 15;440(1):157-66. doi: 10.1042/BJ20110530.
9 Chromosome 13q deletion syndrome involving 13q31qter: A case report.Mol Med Rep. 2017 Jun;15(6):3658-3664. doi: 10.3892/mmr.2017.6425. Epub 2017 Apr 3.
10 Epithelial-Mesenchymal Transition (EMT) Gene Variants and Epithelial Ovarian Cancer (EOC) Risk.Genet Epidemiol. 2015 Dec;39(8):689-97. doi: 10.1002/gepi.21921. Epub 2015 Sep 24.
11 Glypican 6 is a putative biomarker for metastatic progression of cutaneous melanoma.PLoS One. 2019 Jun 14;14(6):e0218067. doi: 10.1371/journal.pone.0218067. eCollection 2019.
12 Boning up on glypicans--opportunities for new insights into bone biology.Cell Biochem Funct. 2013 Mar;31(2):91-114. doi: 10.1002/cbf.2939. Epub 2013 Jan 7.
13 The genetic architecture of osteoporosis and fracture risk.Bone. 2019 Sep;126:2-10. doi: 10.1016/j.bone.2019.04.005. Epub 2019 Apr 10.
14 Allelic imbalance at 13q31 is associated with reduced GPC6 in Chinese with sporadic retinoblastoma.Br J Ophthalmol. 2010 Mar;94(3):357-62. doi: 10.1136/bjo.2009.158832. Epub 2009 Sep 1.
15 Genome-wide association study of schizophrenia in Ashkenazi Jews.Am J Med Genet B Neuropsychiatr Genet. 2015 Dec;168(8):649-59. doi: 10.1002/ajmg.b.32349. Epub 2015 Jul 21.
16 Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol. 2013 Jan;87(1):123-43.
17 Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010 May;115(1):66-79.
18 Development of a neural teratogenicity test based on human embryonic stem cells: response to retinoic acid exposure. Toxicol Sci. 2011 Dec;124(2):370-7.
19 Gene expression analysis of precision-cut human liver slices indicates stable expression of ADME-Tox related genes. Toxicol Appl Pharmacol. 2011 May 15;253(1):57-69.
20 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
21 Activation of AIFM2 enhances apoptosis of human lung cancer cells undergoing toxicological stress. Toxicol Lett. 2016 Sep 6;258:227-236.
22 Prenatal arsenic exposure and the epigenome: identifying sites of 5-methylcytosine alterations that predict functional changes in gene expression in newborn cord blood and subsequent birth outcomes. Toxicol Sci. 2015 Jan;143(1):97-106. doi: 10.1093/toxsci/kfu210. Epub 2014 Oct 10.
23 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
24 Endoplasmic reticulum stress contributes to arsenic trioxide-induced intrinsic apoptosis in human umbilical and bone marrow mesenchymal stem cells. Environ Toxicol. 2016 Mar;31(3):314-28.
25 Effects of 1alpha,25 dihydroxyvitamin D3 and testosterone on miRNA and mRNA expression in LNCaP cells. Mol Cancer. 2011 May 18;10:58.
26 Gene Expression Regulation and Pathway Analysis After Valproic Acid and Carbamazepine Exposure in a Human Embryonic Stem Cell-Based Neurodevelopmental Toxicity Assay. Toxicol Sci. 2015 Aug;146(2):311-20. doi: 10.1093/toxsci/kfv094. Epub 2015 May 15.
27 Acute hypersensitivity of pluripotent testicular cancer-derived embryonal carcinoma to low-dose 5-aza deoxycytidine is associated with global DNA Damage-associated p53 activation, anti-pluripotency and DNA demethylation. PLoS One. 2012;7(12):e53003. doi: 10.1371/journal.pone.0053003. Epub 2012 Dec 27.
28 A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors. Arch Toxicol. 2015 Sep;89(9):1599-618.
29 Identification of mechanisms of action of bisphenol a-induced human preadipocyte differentiation by transcriptional profiling. Obesity (Silver Spring). 2014 Nov;22(11):2333-43.
30 Identification of biomarkers and outcomes of endocrine disruption in human ovarian cortex using In Vitro Models. Toxicology. 2023 Feb;485:153425. doi: 10.1016/j.tox.2023.153425. Epub 2023 Jan 5.
31 LSD1 activates a lethal prostate cancer gene network independently of its demethylase function. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4179-E4188.
32 A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer. Toxicol Appl Pharmacol. 2015 Jun 1;285(2):79-88.
33 Endoplasmic reticulum stress and MAPK signaling pathway activation underlie leflunomide-induced toxicity in HepG2 Cells. Toxicology. 2017 Dec 1;392:11-21.
34 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
35 Bisphenol A induces DSB-ATM-p53 signaling leading to cell cycle arrest, senescence, autophagy, stress response, and estrogen release in human fetal lung fibroblasts. Arch Toxicol. 2018 Apr;92(4):1453-1469.
36 From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.