General Information of Drug Off-Target (DOT) (ID: OTWGFRHD)

DOT Name Structural maintenance of chromosomes protein 3 (SMC3)
Synonyms SMC protein 3; SMC-3; Basement membrane-associated chondroitin proteoglycan; Bamacan; Chondroitin sulfate proteoglycan 6; Chromosome-associated polypeptide; hCAP
Gene Name SMC3
Related Disease
Cornelia de Lange syndrome ( )
Cornelia de Lange syndrome 3 ( )
Lung cancer ( )
Lung carcinoma ( )
Neurodevelopmental disorder ( )
Roberts-SC phocomelia syndrome ( )
Acute myelogenous leukaemia ( )
Adenocarcinoma ( )
Adult lymphoma ( )
Advanced cancer ( )
Allergic asthma ( )
Bone cancer ( )
Bone osteosarcoma ( )
Burkitt lymphoma ( )
Carcinoma ( )
Castration-resistant prostate carcinoma ( )
Colon carcinoma ( )
Colorectal neoplasm ( )
Early-onset anterior polar cataract ( )
Fetal growth restriction ( )
Intestinal neoplasm ( )
Isolated congenital microcephaly ( )
Lymphoma ( )
Myeloid leukaemia ( )
Pediatric lymphoma ( )
Pneumonia ( )
Pneumonitis ( )
Prostate cancer ( )
Prostate carcinoma ( )
Retinitis pigmentosa ( )
Trichohepatoenteric syndrome ( )
Turner syndrome ( )
Gingivitis ( )
Intellectual disability ( )
Neoplasm ( )
Wiedemann-Steiner syndrome ( )
Hepatocellular carcinoma ( )
Prune belly syndrome ( )
UniProt ID
SMC3_HUMAN
3D Structure
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2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
6WG3; 6WG4; 6WG6; 6WGE; 7W1M
Pfam ID
PF06470 ; PF02463
Sequence
MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKEESISLMK
ETEGKREKINELLKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLD
ELSAKRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKISAMKEEKEQLSAERQEQIK
QRTKLELKAKDLQDELAGNSEQRKRLLKERQKLLEKIEEKQKELAETEPKFNSVKEKEER
GIARLAQATQERTDLYAKQGRGSQFTSKEERDKWIKKELKSLDQAINDKKRQIAAIHKDL
EDTEANKEKNLEQYNKLDQDLNEVKARVEELDRKYYEVKNKKDELQSERNYLWREENAEQ
QALAAKREDLEKKQQLLRAATGKAILNGIDSINKVLDHFRRKGINQHVQNGYHGIVMNNF
ECEPAFYTCVEVTAGNRLFYHIVDSDEVSTKILMEFNKMNLPGEVTFLPLNKLDVRDTAY
PETNDAIPMISKLRYNPRFDKAFKHVFGKTLICRSMEVSTQLARAFTMDCITLEGDQVSH
RGALTGGYYDTRKSRLELQKDVRKAEEELGELEAKLNENLRRNIERINNEIDQLMNQMQQ
IETQQRKFKASRDSILSEMKMLKEKRQQSEKTFMPKQRSLQSLEASLHAMESTRESLKAE
LGTDLLSQLSLEDQKRVDALNDEIRQLQQENRQLLNERIKLEGIITRVETYLNENLRKRL
DQVEQELNELRETEGGTVLTATTSELEAINKRVKDTMARSEDLDNSIDKTEAGIKELQKS
MERWKNMEKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAFEKYQTL
SLKQLFRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNV
LELRKYEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERG
SGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFAIQKCDPAPFY
LFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKFYGVKFRNKVSHIDV
ITAEMAKDFVEDDTTHG
Function
Central component of cohesin, a complex required for chromosome cohesion during the cell cycle. The cohesin complex may form a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. Cohesion is coupled to DNA replication and is involved in DNA repair. The cohesin complex also plays an important role in spindle pole assembly during mitosis and in chromosomes movement.
KEGG Pathway
Cell cycle (hsa04110 )
Oocyte meiosis (hsa04114 )
Reactome Pathway
Separation of Sister Chromatids (R-HSA-2467813 )
Establishment of Sister Chromatid Cohesion (R-HSA-2468052 )
Cohesin Loading onto Chromatin (R-HSA-2470946 )
Resolution of Sister Chromatid Cohesion (R-HSA-2500257 )
SUMOylation of DNA damage response and repair proteins (R-HSA-3108214 )
Estrogen-dependent gene expression (R-HSA-9018519 )
Meiotic synapsis (R-HSA-1221632 )

Molecular Interaction Atlas (MIA) of This DOT

38 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Cornelia de Lange syndrome DISEQSXO Definitive Autosomal dominant [1]
Cornelia de Lange syndrome 3 DIS69WC6 Definitive Autosomal dominant [2]
Lung cancer DISCM4YA Definitive Biomarker [3]
Lung carcinoma DISTR26C Definitive Biomarker [3]
Neurodevelopmental disorder DIS372XH Definitive Biomarker [4]
Roberts-SC phocomelia syndrome DIS4JXZ4 Definitive Biomarker [5]
Acute myelogenous leukaemia DISCSPTN Strong Genetic Variation [6]
Adenocarcinoma DIS3IHTY Strong Biomarker [7]
Adult lymphoma DISK8IZR Strong Biomarker [8]
Advanced cancer DISAT1Z9 Strong Genetic Variation [6]
Allergic asthma DISHF0H3 Strong Biomarker [9]
Bone cancer DIS38NA0 Strong Biomarker [10]
Bone osteosarcoma DIST1004 Strong Biomarker [10]
Burkitt lymphoma DIS9D5XU Strong Altered Expression [11]
Carcinoma DISH9F1N Strong Altered Expression [7]
Castration-resistant prostate carcinoma DISVGAE6 Strong Biomarker [12]
Colon carcinoma DISJYKUO Strong Altered Expression [13]
Colorectal neoplasm DISR1UCN Strong Genetic Variation [14]
Early-onset anterior polar cataract DISTOPIY Strong Biomarker [15]
Fetal growth restriction DIS5WEJ5 Strong Biomarker [16]
Intestinal neoplasm DISK0GUH Strong Biomarker [17]
Isolated congenital microcephaly DISUXHZ6 Strong Biomarker [16]
Lymphoma DISN6V4S Strong Biomarker [8]
Myeloid leukaemia DISMN944 Strong Biomarker [18]
Pediatric lymphoma DIS51BK2 Strong Biomarker [8]
Pneumonia DIS8EF3M Strong Genetic Variation [15]
Pneumonitis DIS88E0K Strong Biomarker [15]
Prostate cancer DISF190Y Strong Biomarker [12]
Prostate carcinoma DISMJPLE Strong Biomarker [12]
Retinitis pigmentosa DISCGPY8 Strong Genetic Variation [19]
Trichohepatoenteric syndrome DISL3ODF Strong Genetic Variation [20]
Turner syndrome DIS2035C Strong Genetic Variation [21]
Gingivitis DISC8RMX moderate Altered Expression [22]
Intellectual disability DISMBNXP moderate Genetic Variation [2]
Neoplasm DISZKGEW moderate Genetic Variation [23]
Wiedemann-Steiner syndrome DIS67KX5 moderate Genetic Variation [24]
Hepatocellular carcinoma DIS0J828 Limited Biomarker [25]
Prune belly syndrome DISBIBMN Limited Biomarker [26]
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⏷ Show the Full List of 38 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
This DOT Affected the Drug Response of 1 Drug(s)
Drug Name Drug ID Highest Status Interaction REF
Afimoxifene DMFORDT Phase 2 Structural maintenance of chromosomes protein 3 (SMC3) affects the response to substance of Afimoxifene. [46]
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17 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [27]
Tretinoin DM49DUI Approved Tretinoin decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [28]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [29]
Ivermectin DMDBX5F Approved Ivermectin decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [30]
Quercetin DM3NC4M Approved Quercetin decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [31]
Testosterone DM7HUNW Approved Testosterone decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [32]
Demecolcine DMCZQGK Approved Demecolcine decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [33]
Bortezomib DMNO38U Approved Bortezomib increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [34]
Testosterone enanthate DMB6871 Approved Testosterone enanthate affects the expression of Structural maintenance of chromosomes protein 3 (SMC3). [35]
Piroxicam DMTK234 Approved Piroxicam decreases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [36]
Phenytoin DMNOKBV Approved Phenytoin increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [37]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [38]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [40]
Torcetrapib DMDHYM7 Discontinued in Phase 2 Torcetrapib increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [42]
Deguelin DMXT7WG Investigative Deguelin increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [43]
OXYBENZONE DMMZYX6 Investigative OXYBENZONE increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [44]
Taurine DMVW7N3 Investigative Taurine increases the expression of Structural maintenance of chromosomes protein 3 (SMC3). [45]
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⏷ Show the Full List of 17 Drug(s)
3 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
TAK-243 DM4GKV2 Phase 1 TAK-243 affects the sumoylation of Structural maintenance of chromosomes protein 3 (SMC3). [39]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 decreases the phosphorylation of Structural maintenance of chromosomes protein 3 (SMC3). [41]
Coumarin DM0N8ZM Investigative Coumarin increases the phosphorylation of Structural maintenance of chromosomes protein 3 (SMC3). [41]
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References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 Mutations in cohesin complex members SMC3 and SMC1A cause a mild variant of cornelia de Lange syndrome with predominant mental retardation. Am J Hum Genet. 2007 Mar;80(3):485-94. doi: 10.1086/511888. Epub 2007 Jan 17.
3 Hydrogen gas inhibits lung cancer progression through targeting SMC3.Biomed Pharmacother. 2018 Aug;104:788-797. doi: 10.1016/j.biopha.2018.05.055. Epub 2018 May 29.
4 Targeted sequencing identifies 91 neurodevelopmental-disorder risk genes with autism and developmental-disability biases. Nat Genet. 2017 Apr;49(4):515-526. doi: 10.1038/ng.3792. Epub 2017 Feb 13.
5 A zebrafish model of Roberts syndrome reveals that Esco2 depletion interferes with development by disrupting the cell cycle.PLoS One. 2011;6(5):e20051. doi: 10.1371/journal.pone.0020051. Epub 2011 May 26.
6 Smc3 is required for mouse embryonic and adult hematopoiesis.Exp Hematol. 2019 Feb;70:70-84.e6. doi: 10.1016/j.exphem.2018.11.008. Epub 2018 Dec 13.
7 The cohesin SMC3 is a target the for beta-catenin/TCF4 transactivation pathway.J Biol Chem. 2003 May 30;278(22):20259-67. doi: 10.1074/jbc.M209511200. Epub 2003 Mar 21.
8 BAM conditioning before autologous transplantation for lymphoma: a study on behalf of the Francophone Society of Bone Marrow Transplantation and Cellular Therapy (SFGM-TC).Ann Hematol. 2019 Aug;98(8):1973-1980. doi: 10.1007/s00277-019-03704-z. Epub 2019 May 20.
9 SMC3 may play an important role in atopic asthma development.Clin Respir J. 2016 Jul;10(4):469-76. doi: 10.1111/crj.12247. Epub 2015 Jan 15.
10 The Ubiquitination of Spinal MrgC Alleviates Bone Cancer Pain and Reduces Intracellular Calcium Concentration in Spinal Neurons in Mice.Neurochem Res. 2019 Nov;44(11):2527-2535. doi: 10.1007/s11064-019-02869-3. Epub 2019 Sep 12.
11 Epstein-Barr virus-encoded poly(A)(-) RNA supports Burkitt's lymphoma growth through interleukin-10 induction.EMBO J. 2000 Dec 15;19(24):6742-50. doi: 10.1093/emboj/19.24.6742.
12 Effective targeting of RNA polymerase I in treatment-resistant prostate cancer.Prostate. 2019 Dec;79(16):1837-1851. doi: 10.1002/pros.23909. Epub 2019 Sep 16.
13 Global gene expression profiling of cells overexpressing SMC3.Mol Cancer. 2005 Sep 12;4:34. doi: 10.1186/1476-4598-4-34.
14 Chromatid cohesion defects may underlie chromosome instability in human colorectal cancers.Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3443-8. doi: 10.1073/pnas.0712384105. Epub 2008 Feb 25.
15 Rates of hospitalization for community-acquired pneumonia among US adults: A systematic review.Vaccine. 2020 Jan 22;38(4):741-751. doi: 10.1016/j.vaccine.2019.10.101. Epub 2019 Dec 13.
16 De novo heterozygous mutations in SMC3 cause a range of Cornelia de Lange syndrome-overlapping phenotypes.Hum Mutat. 2015 Apr;36(4):454-62. doi: 10.1002/humu.22761. Epub 2015 Mar 17.
17 Overexpression of bamacan/SMC3 causes transformation.J Biol Chem. 2000 Jul 7;275(27):20235-8. doi: 10.1074/jbc.C000213200.
18 Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms.Nat Genet. 2013 Oct;45(10):1232-7. doi: 10.1038/ng.2731. Epub 2013 Aug 18.
19 RPGR-ORF15, which is mutated in retinitis pigmentosa, associates with SMC1, SMC3, and microtubule transport proteins.J Biol Chem. 2005 Sep 30;280(39):33580-7. doi: 10.1074/jbc.M505827200. Epub 2005 Jul 25.
20 Epileptic features in Cornelia de Lange syndrome: case report and literature review.Brain Dev. 2014 Nov;36(10):837-43. doi: 10.1016/j.braindev.2013.12.008. Epub 2014 Jan 22.
21 RAPIDR: an analysis package for non-invasive prenatal testing of aneuploidy.Bioinformatics. 2014 Oct 15;30(20):2965-7. doi: 10.1093/bioinformatics/btu419. Epub 2014 Jul 1.
22 Raised chondroitin sulphate WF6 epitope levels in gingival crevicular fluid in chronic periodontitis.J Clin Periodontol. 2008 Oct;35(10):871-6. doi: 10.1111/j.1600-051X.2008.01312.x. Epub 2008 Aug 24.
23 A non-functional neoepitope specific CD8(+) T-cell response induced by tumor derived antigen exposure in vivo.Oncoimmunology. 2018 Dec 24;8(3):1553478. doi: 10.1080/2162402X.2018.1553478. eCollection 2019.
24 Global transcriptional disturbances underlie Cornelia de Lange syndrome and related phenotypes. J Clin Invest. 2015 Feb;125(2):636-51. doi: 10.1172/JCI77435. Epub 2015 Jan 9.
25 Silencing non-SMC chromosome-associated polypeptide G inhibits proliferation and induces apoptosis in hepatocellular carcinoma cells.Can J Physiol Pharmacol. 2018 Dec;96(12):1246-1254. doi: 10.1139/cjpp-2018-0195. Epub 2018 Aug 8.
26 The Significant Reduction or Complete Eradication of Subcutaneous and Metastatic Lesions in a Pheochromocytoma Mouse Model after Immunotherapy Using Mannan-BAM, TLR Ligands, and Anti-CD40.Cancers (Basel). 2019 May 11;11(5):654. doi: 10.3390/cancers11050654.
27 Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010 May;115(1):66-79.
28 Development of a neural teratogenicity test based on human embryonic stem cells: response to retinoic acid exposure. Toxicol Sci. 2011 Dec;124(2):370-7.
29 Gene expression analysis of precision-cut human liver slices indicates stable expression of ADME-Tox related genes. Toxicol Appl Pharmacol. 2011 May 15;253(1):57-69.
30 Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment. J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
31 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
32 The exosome-like vesicles derived from androgen exposed-prostate stromal cells promote epithelial cells proliferation and epithelial-mesenchymal transition. Toxicol Appl Pharmacol. 2021 Jan 15;411:115384. doi: 10.1016/j.taap.2020.115384. Epub 2020 Dec 25.
33 Characterization of formaldehyde's genotoxic mode of action by gene expression analysis in TK6 cells. Arch Toxicol. 2013 Nov;87(11):1999-2012.
34 The proapoptotic effect of zoledronic acid is independent of either the bone microenvironment or the intrinsic resistance to bortezomib of myeloma cells and is enhanced by the combination with arsenic trioxide. Exp Hematol. 2011 Jan;39(1):55-65.
35 Transcriptional profiling of testosterone-regulated genes in the skeletal muscle of human immunodeficiency virus-infected men experiencing weight loss. J Clin Endocrinol Metab. 2007 Jul;92(7):2793-802. doi: 10.1210/jc.2006-2722. Epub 2007 Apr 17.
36 Apoptosis induced by piroxicam plus cisplatin combined treatment is triggered by p21 in mesothelioma. PLoS One. 2011;6(8):e23569.
37 Role of phenytoin in wound healing: microarray analysis of early transcriptional responses in human dermal fibroblasts. Biochem Biophys Res Commun. 2004 Feb 13;314(3):661-6. doi: 10.1016/j.bbrc.2003.12.146.
38 Label-free quantitative proteomic analysis identifies the oncogenic role of FOXA1 in BaP-transformed 16HBE cells. Toxicol Appl Pharmacol. 2020 Sep 15;403:115160. doi: 10.1016/j.taap.2020.115160. Epub 2020 Jul 25.
39 Inhibiting ubiquitination causes an accumulation of SUMOylated newly synthesized nuclear proteins at PML bodies. J Biol Chem. 2019 Oct 18;294(42):15218-15234. doi: 10.1074/jbc.RA119.009147. Epub 2019 Jul 8.
40 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
41 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
42 Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach. BMC Syst Biol. 2012 Dec 10;6:152.
43 Neurotoxicity and underlying cellular changes of 21 mitochondrial respiratory chain inhibitors. Arch Toxicol. 2021 Feb;95(2):591-615. doi: 10.1007/s00204-020-02970-5. Epub 2021 Jan 29.
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45 Taurine-responsive genes related to signal transduction as identified by cDNA microarray analyses of HepG2 cells. J Med Food. 2006 Spring;9(1):33-41. doi: 10.1089/jmf.2006.9.33.
46 Genome-wide functional screen identifies a compendium of genes affecting sensitivity to tamoxifen. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):2730-5. doi: 10.1073/pnas.1018872108. Epub 2011 Apr 11.