General Information of Drug Off-Target (DOT) (ID: OT82RTMT)

DOT Name ]-phosphatase 1, mitochondrial (PDP1)
Synonyms PDP 1; EC 3.1.3.43; Protein phosphatase 2C; Pyruvate dehydrogenase phosphatase catalytic subunit 1; PDPC 1
Gene Name PDP1
Related Disease
Acidosis ( )
Pyruvate dehydrogenase complex deficiency ( )
Subarachnoid hemorrhage ( )
Alzheimer disease ( )
Brain cancer ( )
Epilepsy ( )
Gastroenteritis ( )
Hepatocellular carcinoma ( )
Lactic acidosis ( )
Leigh syndrome ( )
Malabsorption syndrome ( )
Methemoglobinemia due to deficiency of methemoglobin reductase ( )
Neoplasm ( )
Paraganglioma ( )
Potassium-aggravated myotonia ( )
Prostate cancer ( )
Pyruvate dehydrogenase phosphatase deficiency ( )
leukaemia ( )
Leukemia ( )
Advanced cancer ( )
Fetal growth restriction ( )
Primary biliary cholangitis ( )
Prostate neoplasm ( )
Psychotic disorder ( )
Thiamine deficiency ( )
Tourette syndrome ( )
UniProt ID
PDP1_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
EC Number
3.1.3.43
Pfam ID
PF00481
Sequence
MPAPTQLFFPLIRNCELSRIYGTACYCHHKHLCCSSSYIPQSRLRYTPHPAYATFCRPKE
NWWQYTQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNQLPAN
APIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAV
ESGRALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESTDIDVKEALINAF
KRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQE
EDGSWSAVTLSNDHNAQNERELERLKLEHPKSEAKSVVKQDRLLGLLMPFRAFGDVKFKW
SIDLQKRVIESGPDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGL
WETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTERRTKMSSVFEDQNAAT
HLIRHAVGNNEFGTVDHERLSKMLSLPEELARMYRDDITIIVVQFNSHVVGAYQNQE
Function
Mitochondrial enzyme that catalyzes the dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex (PDC), thereby stimulating the conversion of pyruvate into acetyl-CoA.
Reactome Pathway
Regulation of pyruvate dehydrogenase (PDH) complex (R-HSA-204174 )

Molecular Interaction Atlas (MIA) of This DOT

26 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Acidosis DISJQTX1 Definitive Biomarker [1]
Pyruvate dehydrogenase complex deficiency DIS8RZP9 Definitive Biomarker [2]
Subarachnoid hemorrhage DISI7I8Y Definitive Biomarker [3]
Alzheimer disease DISF8S70 Strong Biomarker [4]
Brain cancer DISBKFB7 Strong Altered Expression [5]
Epilepsy DISBB28L Strong Genetic Variation [6]
Gastroenteritis DISXQCG5 Strong Biomarker [7]
Hepatocellular carcinoma DIS0J828 Strong Biomarker [8]
Lactic acidosis DISZI1ZK Strong Genetic Variation [9]
Leigh syndrome DISWQU45 Strong Biomarker [7]
Malabsorption syndrome DISGMUVS Strong Biomarker [10]
Methemoglobinemia due to deficiency of methemoglobin reductase DISZAEZH Strong Biomarker [7]
Neoplasm DISZKGEW Strong Biomarker [11]
Paraganglioma DIS2XXH5 Strong Biomarker [12]
Potassium-aggravated myotonia DISRO6ZH Strong Biomarker [13]
Prostate cancer DISF190Y Strong Biomarker [14]
Pyruvate dehydrogenase phosphatase deficiency DISGMW2D Strong Autosomal recessive [15]
leukaemia DISS7D1V moderate Posttranslational Modification [16]
Leukemia DISNAKFL moderate Posttranslational Modification [16]
Advanced cancer DISAT1Z9 Limited Biomarker [17]
Fetal growth restriction DIS5WEJ5 Limited Altered Expression [2]
Primary biliary cholangitis DIS43E0O Limited Biomarker [18]
Prostate neoplasm DISHDKGQ Limited Altered Expression [14]
Psychotic disorder DIS4UQOT Limited Biomarker [19]
Thiamine deficiency DISONDW6 Limited Biomarker [20]
Tourette syndrome DISX9D54 No Known Unknown [21]
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⏷ Show the Full List of 26 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
2 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the methylation of ]-phosphatase 1, mitochondrial (PDP1). [22]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene affects the methylation of ]-phosphatase 1, mitochondrial (PDP1). [35]
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17 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [23]
Tretinoin DM49DUI Approved Tretinoin decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [24]
Acetaminophen DMUIE76 Approved Acetaminophen increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [25]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [26]
Quercetin DM3NC4M Approved Quercetin affects the expression of ]-phosphatase 1, mitochondrial (PDP1). [27]
Hydrogen peroxide DM1NG5W Approved Hydrogen peroxide increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [28]
Calcitriol DM8ZVJ7 Approved Calcitriol decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [29]
Carbamazepine DMZOLBI Approved Carbamazepine affects the expression of ]-phosphatase 1, mitochondrial (PDP1). [30]
Progesterone DMUY35B Approved Progesterone decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [31]
Testosterone enanthate DMB6871 Approved Testosterone enanthate affects the expression of ]-phosphatase 1, mitochondrial (PDP1). [32]
Indomethacin DMSC4A7 Approved Indomethacin decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [33]
Urethane DM7NSI0 Phase 4 Urethane increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [34]
Torcetrapib DMDHYM7 Discontinued in Phase 2 Torcetrapib increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [36]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [37]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [38]
Milchsaure DM462BT Investigative Milchsaure increases the expression of ]-phosphatase 1, mitochondrial (PDP1). [39]
Coumestrol DM40TBU Investigative Coumestrol decreases the expression of ]-phosphatase 1, mitochondrial (PDP1). [40]
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⏷ Show the Full List of 17 Drug(s)

References

1 Pyruvate dehydrogenase phosphatase deficiency: a cause of congenital chronic lactic acidosis in infancy.Pediatr Res. 1975 Dec;9(12):935-9. doi: 10.1203/00006450-197512000-00015.
2 Increased pyruvate dehydrogenase activity in skeletal muscle of growth-restricted ovine fetuses.Am J Physiol Regul Integr Comp Physiol. 2019 Oct 1;317(4):R513-R520. doi: 10.1152/ajpregu.00106.2019. Epub 2019 Jul 17.
3 Propentdyopents as Heme Degradation Intermediates Constrict Mouse Cerebral Arterioles and Are Present in the Cerebrospinal Fluid of Patients With Subarachnoid Hemorrhage.Circ Res. 2019 Jun 7;124(12):e101-e114. doi: 10.1161/CIRCRESAHA.118.314160. Epub 2019 Apr 5.
4 Mitochondrial bioenergetic deficit precedes Alzheimer's pathology in female mouse model of Alzheimer's disease.Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14670-5. doi: 10.1073/pnas.0903563106. Epub 2009 Aug 10.
5 Enhanced pyruvate dehydrogenase activity improves cardiac outcomes in a murine model of cardiac arrest.PLoS One. 2017 Sep 21;12(9):e0185046. doi: 10.1371/journal.pone.0185046. eCollection 2017.
6 Pyruvate dehydrogenase complex deficiency and its relationship with epilepsy frequency--An overview.Epilepsy Res. 2015 Oct;116:40-52. doi: 10.1016/j.eplepsyres.2015.07.002. Epub 2015 Jul 8.
7 Mutations in human lipoyltransferase gene LIPT1 cause a Leigh disease with secondary deficiency for pyruvate and alpha-ketoglutarate dehydrogenase. Orphanet J Rare Dis. 2013 Dec 17;8:192. doi: 10.1186/1750-1172-8-192.
8 The HGF-MET axis coordinates liver cancer metabolism and autophagy for chemotherapeutic resistance.Autophagy. 2019 Jul;15(7):1258-1279. doi: 10.1080/15548627.2019.1580105. Epub 2019 Feb 20.
9 The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis.Mol Cell Biol. 2005 Apr;25(8):3286-94. doi: 10.1128/MCB.25.8.3286-3294.2005.
10 Reduced PDK4 expression associates with increased insulin sensitivity in postobese patients.Obes Res. 2003 Feb;11(2):176-82. doi: 10.1038/oby.2003.28.
11 Biocompatible cationic pullulan-g-desoxycholic acid-g-PEI micelles used to co-deliver drug and gene for cancer therapy.Mater Sci Eng C Mater Biol Appl. 2017 Jan 1;70(Pt 1):418-429. doi: 10.1016/j.msec.2016.09.019. Epub 2016 Sep 7.
12 Effects of dichloroacetate as single agent or in combination with GW6471 and metformin in paraganglioma cells.Sci Rep. 2018 Sep 11;8(1):13610. doi: 10.1038/s41598-018-31797-5.
13 Elaboration on the Distribution of Hydrophobic Segments in the Chains of Amphiphilic Cationic Polymers for Small Interfering RNA Delivery.ACS Appl Mater Interfaces. 2017 Sep 27;9(38):32463-32474. doi: 10.1021/acsami.7b07337. Epub 2017 Sep 13.
14 Compartmentalized activities of the pyruvate dehydrogenase complex sustain lipogenesis in prostate cancer.Nat Genet. 2018 Feb;50(2):219-228. doi: 10.1038/s41588-017-0026-3. Epub 2018 Jan 15.
15 The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources. Genet Med. 2022 Aug;24(8):1732-1742. doi: 10.1016/j.gim.2022.04.017. Epub 2022 May 4.
16 Tyr-94 phosphorylation inhibits pyruvate dehydrogenase phosphatase 1 and promotes tumor growth.J Biol Chem. 2014 Aug 1;289(31):21413-22. doi: 10.1074/jbc.M114.581124. Epub 2014 Jun 24.
17 Care experiences among dually enrolled older adults with cancer: SEER-CAHPS, 2005-2013.Cancer Causes Control. 2019 Oct;30(10):1137-1144. doi: 10.1007/s10552-019-01218-7. Epub 2019 Aug 17.
18 The human pyruvate dehydrogenase complex: a polymorphic region of the lipoate acetyl transferase (E2) subunit gene.Biochim Biophys Acta. 1991 Sep 23;1097(2):128-32. doi: 10.1016/0925-4439(91)90096-r.
19 Increases in institutionalization, healthcare resource utilization, and mortality risk associated with Parkinson disease psychosis: Retrospective cohort study.Parkinsonism Relat Disord. 2019 Nov;68:95-101. doi: 10.1016/j.parkreldis.2019.10.018. Epub 2019 Oct 24.
20 Stabilization of the hypoxia-inducible transcription Factor-1 alpha (HIF-1) in thiamine deficiency is mediated by pyruvate accumulation.Toxicol Appl Pharmacol. 2018 Sep 15;355:180-188. doi: 10.1016/j.taap.2018.07.004. Epub 2018 Jul 6.
21 De Novo Coding Variants Are Strongly Associated with Tourette Disorder. Neuron. 2017 May 3;94(3):486-499.e9. doi: 10.1016/j.neuron.2017.04.024.
22 Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
23 Cyclosporine A--induced oxidative stress in human renal mesangial cells: a role for ERK 1/2 MAPK signaling. Toxicol Sci. 2012 Mar;126(1):101-13.
24 Transcriptional and Metabolic Dissection of ATRA-Induced Granulocytic Differentiation in NB4 Acute Promyelocytic Leukemia Cells. Cells. 2020 Nov 5;9(11):2423. doi: 10.3390/cells9112423.
25 Increased mitochondrial ROS formation by acetaminophen in human hepatic cells is associated with gene expression changes suggesting disruption of the mitochondrial electron transport chain. Toxicol Lett. 2015 Apr 16;234(2):139-50.
26 Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper. Physiol Genomics. 2009 Aug 7;38(3):386-401.
27 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
28 Oxidative stress modulates theophylline effects on steroid responsiveness. Biochem Biophys Res Commun. 2008 Dec 19;377(3):797-802.
29 Large-scale in silico and microarray-based identification of direct 1,25-dihydroxyvitamin D3 target genes. Mol Endocrinol. 2005 Nov;19(11):2685-95.
30 Gene Expression Regulation and Pathway Analysis After Valproic Acid and Carbamazepine Exposure in a Human Embryonic Stem Cell-Based Neurodevelopmental Toxicity Assay. Toxicol Sci. 2015 Aug;146(2):311-20. doi: 10.1093/toxsci/kfv094. Epub 2015 May 15.
31 Gene expression in endometrial cancer cells (Ishikawa) after short time high dose exposure to progesterone. Steroids. 2008 Jan;73(1):116-28.
32 Transcriptional profiling of testosterone-regulated genes in the skeletal muscle of human immunodeficiency virus-infected men experiencing weight loss. J Clin Endocrinol Metab. 2007 Jul;92(7):2793-802. doi: 10.1210/jc.2006-2722. Epub 2007 Apr 17.
33 Mechanisms of indomethacin-induced alterations in the choline phospholipid metabolism of breast cancer cells. Neoplasia. 2006 Sep;8(9):758-71.
34 Ethyl carbamate induces cell death through its effects on multiple metabolic pathways. Chem Biol Interact. 2017 Nov 1;277:21-32.
35 Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study. Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.
36 Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach. BMC Syst Biol. 2012 Dec 10;6:152.
37 Isobaric tags for relative and absolute quantitation-based proteomics analysis of the effect of ginger oil on bisphenol A-induced breast cancer cell proliferation. Oncol Lett. 2021 Feb;21(2):101. doi: 10.3892/ol.2020.12362. Epub 2020 Dec 8.
38 From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.
39 Transcriptional profiling of lactic acid treated reconstructed human epidermis reveals pathways underlying stinging and itch. Toxicol In Vitro. 2019 Jun;57:164-173.
40 Pleiotropic combinatorial transcriptomes of human breast cancer cells exposed to mixtures of dietary phytoestrogens. Food Chem Toxicol. 2009 Apr;47(4):787-95.