General Information of Drug Off-Target (DOT) (ID: OTHLTV53)

DOT Name Collagen alpha-1(XII) chain (COL12A1)
Synonyms Collagen alpha-1(XII) chain
Gene Name COL12A1
Related Disease
Acute myelogenous leukaemia ( )
Advanced cancer ( )
Alzheimer disease ( )
Bethlem myopathy 2 ( )
Colon cancer ( )
Colon carcinoma ( )
Congenital myopathy ( )
Ehlers-Danlos syndrome ( )
Exostosis ( )
Lung cancer ( )
Malignant mesothelioma ( )
Microcephaly, epilepsy, and diabetes syndrome ( )
Myopathy ( )
Neoplasm ( )
Obesity ( )
Obsolete Bethlem myopathy 2 ( )
Prostate cancer ( )
Prostate carcinoma ( )
Ullrich congenital muscular dystrophy 1A ( )
Ullrich congenital muscular dystrophy 2 ( )
Breast cancer ( )
Colorectal carcinoma ( )
Endometriosis ( )
Bethlem myopathy ( )
Ullrich congenital muscular dystrophy ( )
Breast carcinoma ( )
Gastric cancer ( )
Rheumatoid arthritis ( )
Stomach cancer ( )
UniProt ID
COCA1_HUMAN
Pfam ID
PF01391 ; PF00041 ; PF00092
Sequence
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAKPVDPIVGYRITVD
PTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEVEESVPVIGQLTIQTGSSTKP
VEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVG
VVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVG
FPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVA
NFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSP
VTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIME
KTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQIS
LVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSN
VPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVE
DFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVF
SYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVNVTAEYEDGFSIPLAGEETTE
EVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVAGGESREVTTPPNQRRRTLE
NLIPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGK
VKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGT
TLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHT
MIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSKTLKVDEETENTMRVTWKPAP
GKVVNYRVVYRPHGRGKQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGEGKLRQGS
GTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDN
TVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADI
VLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKK
SLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPS
KKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVK
GPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTV
LKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGA
TGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHDLTSEPVTVR
EVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTS
LKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGAS
DVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTIYEVSITAIYPDESESDDLIGS
ERTLPILTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTT
IGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTL
NVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEG
DGGRTSDTGRTLMRGLARNVQVYNPTPNSLDVRWDPAPGPVLQYRVVYSPVDGTRPSESI
VVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNS
LSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYE
DGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPME
AFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQIGWDTF
CVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPNLE
GPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFN
KVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGN
TRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGV
ADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPG
FKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRIQKNAFVNQPTADLHPNGLPPSYTII
LLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEV
KTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAA
FQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGA
KGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLP
GRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDH
GRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQ
PGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLP
GPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYP
GSG
Function
Type XII collagen interacts with type I collagen-containing fibrils, the COL1 domain could be associated with the surface of the fibrils, and the COL2 and NC3 domains may be localized in the perifibrillar matrix.
Tissue Specificity
Found in collagen I-containing tissues: both isoform 1 and isoform 2 appear in amnion, chorion, skeletal muscle, small intestine, and in cell culture of dermal fibroblasts, keratinocytes and endothelial cells. Only isoform 2 is found in lung, placenta, kidney and a squamous cell carcinoma cell line. Isoform 1 is also present in the corneal epithelial Bowman's membrane (BM) and the interfibrillar matrix of the corneal stroma, but it is not detected in the limbal BM.
KEGG Pathway
Protein digestion and absorption (hsa04974 )
Reactome Pathway
Collagen biosynthesis and modifying enzymes (R-HSA-1650814 )
Assembly of collagen fibrils and other multimeric structures (R-HSA-2022090 )
Collagen chain trimerization (R-HSA-8948216 )
Collagen degradation (R-HSA-1442490 )

Molecular Interaction Atlas (MIA) of This DOT

29 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Acute myelogenous leukaemia DISCSPTN Strong Biomarker [1]
Advanced cancer DISAT1Z9 Strong Biomarker [2]
Alzheimer disease DISF8S70 Strong Genetic Variation [3]
Bethlem myopathy 2 DISDC4S5 Strong Autosomal dominant [4]
Colon cancer DISVC52G Strong Biomarker [5]
Colon carcinoma DISJYKUO Strong Biomarker [5]
Congenital myopathy DISLSK9G Strong Genetic Variation [6]
Ehlers-Danlos syndrome DISSVBRR Strong Genetic Variation [7]
Exostosis DIS3VKEI Strong Biomarker [8]
Lung cancer DISCM4YA Strong Genetic Variation [9]
Malignant mesothelioma DISTHJGH Strong Biomarker [10]
Microcephaly, epilepsy, and diabetes syndrome DISMC1NE Strong Biomarker [6]
Myopathy DISOWG27 Strong Genetic Variation [7]
Neoplasm DISZKGEW Strong Altered Expression [2]
Obesity DIS47Y1K Strong Altered Expression [11]
Obsolete Bethlem myopathy 2 DISLOP71 Strong Autosomal dominant [12]
Prostate cancer DISF190Y Strong Biomarker [13]
Prostate carcinoma DISMJPLE Strong Biomarker [13]
Ullrich congenital muscular dystrophy 1A DISFHHF0 Strong GermlineCausalMutation [4]
Ullrich congenital muscular dystrophy 2 DIS9T7C6 Strong Autosomal recessive [4]
Breast cancer DIS7DPX1 moderate Altered Expression [14]
Colorectal carcinoma DIS5PYL0 moderate Biomarker [15]
Endometriosis DISX1AG8 moderate Genetic Variation [16]
Bethlem myopathy DISVF5K2 Supportive Autosomal dominant [17]
Ullrich congenital muscular dystrophy DISJWD0V Supportive Autosomal dominant [4]
Breast carcinoma DIS2UE88 Limited Altered Expression [14]
Gastric cancer DISXGOUK Limited Biomarker [2]
Rheumatoid arthritis DISTSB4J Limited Altered Expression [18]
Stomach cancer DISKIJSX Limited Biomarker [2]
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⏷ Show the Full List of 29 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
21 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate increases the expression of Collagen alpha-1(XII) chain (COL12A1). [19]
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [20]
Tretinoin DM49DUI Approved Tretinoin increases the expression of Collagen alpha-1(XII) chain (COL12A1). [21]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [22]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [23]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [24]
Cisplatin DMRHGI9 Approved Cisplatin decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [25]
Estradiol DMUNTE3 Approved Estradiol decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [26]
Ivermectin DMDBX5F Approved Ivermectin decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [27]
Carbamazepine DMZOLBI Approved Carbamazepine affects the expression of Collagen alpha-1(XII) chain (COL12A1). [29]
Phenobarbital DMXZOCG Approved Phenobarbital affects the expression of Collagen alpha-1(XII) chain (COL12A1). [30]
Fluorouracil DMUM7HZ Approved Fluorouracil decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [23]
Dexamethasone DMMWZET Approved Dexamethasone decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [31]
Dihydrotestosterone DM3S8XC Phase 4 Dihydrotestosterone increases the expression of Collagen alpha-1(XII) chain (COL12A1). [32]
Genistein DM0JETC Phase 2/3 Genistein increases the expression of Collagen alpha-1(XII) chain (COL12A1). [33]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene increases the mutagenesis of Collagen alpha-1(XII) chain (COL12A1). [34]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [35]
Geldanamycin DMS7TC5 Discontinued in Phase 2 Geldanamycin increases the expression of Collagen alpha-1(XII) chain (COL12A1). [36]
Bisphenol A DM2ZLD7 Investigative Bisphenol A increases the expression of Collagen alpha-1(XII) chain (COL12A1). [33]
Paraquat DMR8O3X Investigative Paraquat decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [37]
Manganese DMKT129 Investigative Manganese decreases the expression of Collagen alpha-1(XII) chain (COL12A1). [38]
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⏷ Show the Full List of 21 Drug(s)
1 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Arsenic DMTL2Y1 Approved Arsenic increases the methylation of Collagen alpha-1(XII) chain (COL12A1). [28]
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References

1 NUP214-RAC1 and RAC1-COL12A1 Fusion in Complex Variant Translocations Involving Chromosomes 6, 7 and 9 in an Acute Myeloid Leukemia Case with DEK-NUP214.Cytogenet Genome Res. 2015;146(4):279-84. doi: 10.1159/000441464. Epub 2015 Oct 31.
2 COL12A1, a novel potential prognostic factor and therapeutic target in gastric cancer.Mol Med Rep. 2019 Oct;20(4):3103-3112. doi: 10.3892/mmr.2019.10548. Epub 2019 Aug 1.
3 Family-based association analyses of imputed genotypes reveal genome-wide significant association of Alzheimer's disease with OSBPL6, PTPRG, and PDCL3.Mol Psychiatry. 2016 Nov;21(11):1608-1612. doi: 10.1038/mp.2015.218. Epub 2016 Feb 2.
4 Recessive and dominant mutations in COL12A1 cause a novel EDS/myopathy overlap syndrome in humans and mice. Hum Mol Genet. 2014 May 1;23(9):2339-52. doi: 10.1093/hmg/ddt627. Epub 2013 Dec 11.
5 Integrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors.Funct Integr Genomics. 2011 Jun;11(2):215-24. doi: 10.1007/s10142-010-0200-5. Epub 2010 Nov 9.
6 Novel Col12A1 variant expands the clinical picture of congenital myopathies with extracellular matrix defects.Muscle Nerve. 2017 Feb;55(2):277-281. doi: 10.1002/mus.25232. Epub 2016 Nov 30.
7 Novel defects in collagen XII and VI expand the mixed myopathy/Ehlers-Danlos syndrome spectrum and lead to variant-specific alterations in the extracellular matrix.Genet Med. 2020 Jan;22(1):112-123. doi: 10.1038/s41436-019-0599-6. Epub 2019 Jul 5.
8 Rearrangement of the COL12A1 and COL4A5 genes in subungual exostosis: molecular cytogenetic delineation of the tumor-specific translocation t(X;6)(q13-14;q22).Int J Cancer. 2006 Apr 15;118(8):1972-6. doi: 10.1002/ijc.21586.
9 Identification of cancer biomarkers of prognostic value using specific gene regulatory networks (GRN): a novel role of RAD51AP1 for ovarian and lung cancers.Carcinogenesis. 2018 Mar 8;39(3):407-417. doi: 10.1093/carcin/bgx122.
10 MicroRNA and mRNA features of malignant pleural mesothelioma and benign asbestos-related pleural effusion.Biomed Res Int. 2015;2015:635748. doi: 10.1155/2015/635748. Epub 2015 Feb 1.
11 Global correlation analysis for microRNA and gene expression profiles in human obesity.Pathol Res Pract. 2015 May;211(5):361-8. doi: 10.1016/j.prp.2014.11.014. Epub 2015 Jan 14.
12 The Gene Curation Coalition: A global effort to harmonize gene-disease evidence resources. Genet Med. 2022 Aug;24(8):1732-1742. doi: 10.1016/j.gim.2022.04.017. Epub 2022 May 4.
13 Screening and identification of key biomarkers in prostate cancer using bioinformatics.Mol Med Rep. 2020 Jan;21(1):311-319. doi: 10.3892/mmr.2019.10799. Epub 2019 Nov 6.
14 MiR-26b is down-regulated in carcinoma-associated fibroblasts from ER-positive breast cancers leading to enhanced cell migration and invasion.J Pathol. 2013 Nov;231(3):388-99. doi: 10.1002/path.4248.
15 Analysis of Colorectal Cancer-Associated Alternative Splicing Based on Transcriptome.DNA Cell Biol. 2020 Jan;39(1):16-24. doi: 10.1089/dna.2019.5111. Epub 2019 Dec 5.
16 New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study.Eur J Obstet Gynecol Reprod Biol. 2017 Oct;217:106-112. doi: 10.1016/j.ejogrb.2017.08.037. Epub 2017 Sep 1.
17 Mutations in the collagen XII gene define a new form of extracellular matrix-related myopathy. Hum Mol Genet. 2014 May 1;23(9):2353-63. doi: 10.1093/hmg/ddt637. Epub 2013 Dec 13.
18 Expression and function of microRNA-188-5p in activated rheumatoid arthritis synovial fibroblasts.Int J Clin Exp Pathol. 2015 May 1;8(5):4953-62. eCollection 2015.
19 Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol. 2013 Jan;87(1):123-43.
20 Integrative "-Omics" analysis in primary human hepatocytes unravels persistent mechanisms of cyclosporine A-induced cholestasis. Chem Res Toxicol. 2016 Dec 19;29(12):2164-2174.
21 Development of a neural teratogenicity test based on human embryonic stem cells: response to retinoic acid exposure. Toxicol Sci. 2011 Dec;124(2):370-7.
22 Blood transcript immune signatures distinguish a subset of people with elevated serum ALT from others given acetaminophen. Clin Pharmacol Ther. 2016 Apr;99(4):432-41.
23 Cell-type-specific responses to chemotherapeutics in breast cancer. Cancer Res. 2004 Jun 15;64(12):4218-26.
24 Extremely low copper concentrations affect gene expression profiles of human prostate epithelial cell lines. Chem Biol Interact. 2010 Oct 6;188(1):214-9.
25 Activation of AIFM2 enhances apoptosis of human lung cancer cells undergoing toxicological stress. Toxicol Lett. 2016 Sep 6;258:227-236.
26 Persistent and non-persistent changes in gene expression result from long-term estrogen exposure of MCF-7 breast cancer cells. J Steroid Biochem Mol Biol. 2011 Feb;123(3-5):140-50.
27 Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment. J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
28 Identification of novel gene targets and putative regulators of arsenic-associated DNA methylation in human urothelial cells and bladder cancer. Chem Res Toxicol. 2015 Jun 15;28(6):1144-55. doi: 10.1021/tx500393y. Epub 2015 Jun 3.
29 Gene Expression Regulation and Pathway Analysis After Valproic Acid and Carbamazepine Exposure in a Human Embryonic Stem Cell-Based Neurodevelopmental Toxicity Assay. Toxicol Sci. 2015 Aug;146(2):311-20. doi: 10.1093/toxsci/kfv094. Epub 2015 May 15.
30 Reproducible chemical-induced changes in gene expression profiles in human hepatoma HepaRG cells under various experimental conditions. Toxicol In Vitro. 2009 Apr;23(3):466-75. doi: 10.1016/j.tiv.2008.12.018. Epub 2008 Dec 30.
31 Identification of mechanisms of action of bisphenol a-induced human preadipocyte differentiation by transcriptional profiling. Obesity (Silver Spring). 2014 Nov;22(11):2333-43.
32 LSD1 activates a lethal prostate cancer gene network independently of its demethylase function. Proc Natl Acad Sci U S A. 2018 May 1;115(18):E4179-E4188.
33 Convergent transcriptional profiles induced by endogenous estrogen and distinct xenoestrogens in breast cancer cells. Carcinogenesis. 2006 Aug;27(8):1567-78.
34 Exome-wide mutation profile in benzo[a]pyrene-derived post-stasis and immortal human mammary epithelial cells. Mutat Res Genet Toxicol Environ Mutagen. 2014 Dec;775-776:48-54. doi: 10.1016/j.mrgentox.2014.10.011. Epub 2014 Nov 4.
35 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
36 Identification of transcriptome signatures and biomarkers specific for potential developmental toxicants inhibiting human neural crest cell migration. Arch Toxicol. 2016 Jan;90(1):159-80.
37 An in vitro strategy using multiple human induced pluripotent stem cell-derived models to assess the toxicity of chemicals: A case study on paraquat. Toxicol In Vitro. 2022 Jun;81:105333. doi: 10.1016/j.tiv.2022.105333. Epub 2022 Feb 16.
38 Gene expression profiling of human primary astrocytes exposed to manganese chloride indicates selective effects on several functions of the cells. Neurotoxicology. 2007 May;28(3):478-89.