General Information of Drug Off-Target (DOT) (ID: OTTGAEJE)

DOT Name CAP-Gly domain-containing linker protein 1 (CLIP1)
Synonyms Cytoplasmic linker protein 1; Cytoplasmic linker protein 170 alpha-2; CLIP-170; Reed-Sternberg intermediate filament-associated protein; Restin
Gene Name CLIP1
Related Disease
Classic Hodgkin lymphoma ( )
Ovarian neoplasm ( )
Advanced cancer ( )
AIDS-related lymphoma ( )
Anaplastic large cell lymphoma ( )
Autism ( )
Autism spectrum disorder ( )
Breast cancer ( )
Breast carcinoma ( )
Breast neoplasm ( )
Hepatitis B virus infection ( )
Hepatocellular carcinoma ( )
Kaposi sarcoma ( )
Myotonic dystrophy ( )
Neoplasm ( )
Carcinoma of liver and intrahepatic biliary tract ( )
Liver cancer ( )
Autosomal recessive non-syndromic intellectual disability ( )
Metastatic malignant neoplasm ( )
Craniodiaphyseal dysplasia ( )
Craniodiaphyseal dysplasia, autosomal dominant ( )
Developmental and epileptic encephalopathy, 2 ( )
Hepatitis C virus infection ( )
Intellectual disability ( )
Type-1 diabetes ( )
UniProt ID
CLIP1_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
2CP5; 2CP6; 2E3H; 2E3I; 2E4H; 2HQH; 2QK0; 3E2U; 3RDV
Pfam ID
PF01302 ; PF16641
Sequence
MSMLKPSGLKAPTKILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDFRV
GERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTR
PSKLTRKVQAEDEANGLQTTPASRATSPLCTSTASMVSSSPSTPSNIPQKPSQPAAKEPS
ATPPISNLTKTASESISNLSEAGSIKKGERELKIGDRVLVGGTKAGVVRFLGETDFAKGE
WCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTKIGFPSTTPAKAKANAVRRVM
ATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTETSSRYARKISGTTALQEALKEK
QQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRTMVEAA
DREKVELLNQLEEEKRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKEL
EQSLLFEKTKADKLQRELEDTRVATVSEKSRIMELEKDLALRVQEVAELRRRLESNKPAG
DVDMSLSLLQEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSK
ENESLKSKLEHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELK
TQIEKMRLDYQHEIENLQNQQDSERAAHAKEMEALRAKLMKVIKEKENSLEAIRSKLDKA
EDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLKATEEKLLDLDALR
KASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQGRELKLTNLQENLS
EVSQVKETLEKELQILKEKFAEASEEAVSVQRSMQETVNKLHQKEEQFNMLSSDLEKLRE
NLADMEAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEE
LQLKLTKANENASFLQKSIEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHN
QCQELKARYERATSETKTKHEEILQNLQKTLLDTEDKLKGAREENSGLLQELEELRKQAD
KAKAAQTAEDAMQIMEQMTKEKTETLASLEDTKQTNAKLQNELDTLKENNLKNVEELNKS
KELLTVENQKMEEFRKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKLE
EERSVLNNQLLEMKKRESKFIKDADEEKASLQKSISITSALLTEKDAELEKLRNEVTVLR
GENASAKSLHSVVQTLESDKVKLELKVKNLELQLKENKRQLSSSSGNTDTQADEDERAQE
SQIDFLNSVIVDLQRKNQDLKMKVEMMSEAALNGNGDDLNNYDSDDQEKQSKKKPRLFCD
ICDCFDLHDTEDCPTQAQMSEDPPHSTHHGSRGEERPYCEICEMFGHWATNCNDDETF
Function
Binds to the plus end of microtubules and regulates the dynamics of the microtubule cytoskeleton. Promotes microtubule growth and microtubule bundling. Links cytoplasmic vesicles to microtubules and thereby plays an important role in intracellular vesicle trafficking. Plays a role macropinocytosis and endosome trafficking.
Tissue Specificity Detected in dendritic cells (at protein level). Highly expressed in the Reed-Sternberg cells of Hodgkin disease.
KEGG Pathway
mTOR sig.ling pathway (hsa04150 )
Reactome Pathway
Separation of Sister Chromatids (R-HSA-2467813 )
Resolution of Sister Chromatid Cohesion (R-HSA-2500257 )
RHO GTPases activate IQGAPs (R-HSA-5626467 )
RHO GTPases Activate Formins (R-HSA-5663220 )
Mitotic Prometaphase (R-HSA-68877 )
EML4 and NUDC in mitotic spindle formation (R-HSA-9648025 )
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal (R-HSA-141444 )

Molecular Interaction Atlas (MIA) of This DOT

25 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Classic Hodgkin lymphoma DISV1LU6 Definitive Biomarker [1]
Ovarian neoplasm DISEAFTY Definitive Biomarker [2]
Advanced cancer DISAT1Z9 Strong Altered Expression [3]
AIDS-related lymphoma DISSLRAU Strong Biomarker [4]
Anaplastic large cell lymphoma DISP4D1R Strong Altered Expression [5]
Autism DISV4V1Z Strong Biomarker [6]
Autism spectrum disorder DISXK8NV Strong Biomarker [6]
Breast cancer DIS7DPX1 Strong Altered Expression [7]
Breast carcinoma DIS2UE88 Strong Altered Expression [7]
Breast neoplasm DISNGJLM Strong Altered Expression [8]
Hepatitis B virus infection DISLQ2XY Strong Genetic Variation [9]
Hepatocellular carcinoma DIS0J828 Strong Biomarker [10]
Kaposi sarcoma DISC1H1Z Strong Biomarker [11]
Myotonic dystrophy DISNBEMX Strong Altered Expression [12]
Neoplasm DISZKGEW Strong Biomarker [13]
Carcinoma of liver and intrahepatic biliary tract DIS8WA0W moderate Biomarker [14]
Liver cancer DISDE4BI moderate Biomarker [14]
Autosomal recessive non-syndromic intellectual disability DISJWRZZ Supportive Autosomal recessive [15]
Metastatic malignant neoplasm DIS86UK6 Disputed Altered Expression [7]
Craniodiaphyseal dysplasia DIST8T27 Limited Biomarker [16]
Craniodiaphyseal dysplasia, autosomal dominant DIS2YXJ1 Limited Biomarker [16]
Developmental and epileptic encephalopathy, 2 DISTFDNW Limited Biomarker [16]
Hepatitis C virus infection DISQ0M8R Limited Biomarker [17]
Intellectual disability DISMBNXP Limited Autosomal recessive [18]
Type-1 diabetes DIS7HLUB Limited Biomarker [19]
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⏷ Show the Full List of 25 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
6 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the methylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [20]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene affects the methylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [34]
PMID28870136-Compound-52 DMFDERP Patented PMID28870136-Compound-52 increases the phosphorylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [36]
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the methylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [38]
Coumarin DM0N8ZM Investigative Coumarin decreases the phosphorylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [36]
Hexadecanoic acid DMWUXDZ Investigative Hexadecanoic acid decreases the phosphorylation of CAP-Gly domain-containing linker protein 1 (CLIP1). [43]
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⏷ Show the Full List of 6 Drug(s)
20 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Ciclosporin DMAZJFX Approved Ciclosporin increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [21]
Tretinoin DM49DUI Approved Tretinoin increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [22]
Acetaminophen DMUIE76 Approved Acetaminophen decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [23]
Doxorubicin DMVP5YE Approved Doxorubicin increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [24]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [25]
Estradiol DMUNTE3 Approved Estradiol decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [26]
Ivermectin DMDBX5F Approved Ivermectin decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [27]
Vorinostat DMWMPD4 Approved Vorinostat decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [28]
Phenobarbital DMXZOCG Approved Phenobarbital affects the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [29]
Menadione DMSJDTY Approved Menadione affects the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [30]
Cocaine DMSOX7I Approved Cocaine increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [31]
Clorgyline DMCEUJD Approved Clorgyline increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [32]
Tocopherol DMBIJZ6 Phase 2 Tocopherol decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [33]
PMID28460551-Compound-2 DM4DOUB Patented PMID28460551-Compound-2 increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [35]
Geldanamycin DMS7TC5 Discontinued in Phase 2 Geldanamycin increases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [37]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [39]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [40]
Milchsaure DM462BT Investigative Milchsaure decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [41]
GALLICACID DM6Y3A0 Investigative GALLICACID decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [42]
Bilirubin DMI0V4O Investigative Bilirubin decreases the expression of CAP-Gly domain-containing linker protein 1 (CLIP1). [44]
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⏷ Show the Full List of 20 Drug(s)

References

1 Hodgkin and Reed-Sternberg cell-associated autoantigen CLIP-170/restin is a marker for dendritic cells and is involved in the trafficking of macropinosomes to the cytoskeleton, supporting a function-based concept of Hodgkin and Reed-Sternberg cells.Blood. 2002 Dec 1;100(12):4139-45. doi: 10.1182/blood.V100.12.4139.
2 Profiling follicle stimulating hormone-induced gene expression changes in normal and malignant human ovarian surface epithelial cells.Oncogene. 2003 Jul 3;22(27):4243-56. doi: 10.1038/sj.onc.1206437.
3 A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data.IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul-Aug;15(4):1037-1051. doi: 10.1109/TCBB.2018.2828305. Epub 2018 Apr 19.
4 Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas. PLoS Pathog. 2012;8(8):e1002884.
5 Restin in Hodgkin's disease and anaplastic large cell lymphoma.Leuk Lymphoma. 1993 Dec;12(1-2):21-6. doi: 10.3109/10428199309059567.
6 Imbalance of Functional Connectivity and Temporal Entropy in Resting-State Networks in Autism Spectrum Disorder: A Machine Learning Approach.Front Neurosci. 2018 Nov 27;12:869. doi: 10.3389/fnins.2018.00869. eCollection 2018.
7 Restin suppressed epithelial-mesenchymal transition and tumor metastasis in breast cancer cells through upregulating mir-200a/b expression via association with p73.Mol Cancer. 2015 May 14;14:102. doi: 10.1186/s12943-015-0370-9.
8 Regulation of tumor angiogenesis by the microtubule-binding protein CLIP-170.Protein Cell. 2013 Apr;4(4):266-76. doi: 10.1007/s13238-013-3007-z. Epub 2013 Apr 3.
9 Monitoring the emergence of hepatitis B virus polymerase gene variants during lamivudine therapy in human immunodeficiency virus coinfected patients: performance of CLIP sequencing and line probe assay.Antivir Ther. 2003 Dec;8(6):627-34.
10 A combination of -fetoprotein, midkine, thioredoxin and a metabolite for predicting hepatocellular carcinoma.Ann Hepatol. 2020 Mar-Apr;19(2):179-185. doi: 10.1016/j.aohep.2019.09.002. Epub 2019 Oct 1.
11 HITS-CLIP analysis uncovers a link between the Kaposi's sarcoma-associated herpesvirus ORF57 protein and host pre-mRNA metabolism.PLoS Pathog. 2015 Feb 24;11(2):e1004652. doi: 10.1371/journal.ppat.1004652. eCollection 2015 Feb.
12 MBNL Sequestration by Toxic RNAs and RNA Misprocessing in the Myotonic Dystrophy Brain.Cell Rep. 2015 Aug 18;12(7):1159-68. doi: 10.1016/j.celrep.2015.07.029. Epub 2015 Aug 6.
13 Clinical, histopathologic, and genomic features of Spitz tumors with ALK fusions.Am J Surg Pathol. 2015 May;39(5):581-91. doi: 10.1097/PAS.0000000000000387.
14 The Munich-Transarterial Chemoembolisation Score Holds Superior Prognostic Capacities Compared to TACE-Tailored Modifications of 9 Established Staging Systems for Hepatocellular Carcinoma.Digestion. 2019;100(1):15-26. doi: 10.1159/000493136. Epub 2018 Oct 3.
15 A defect in the CLIP1 gene (CLIP-170) can cause autosomal recessive intellectual disability. Eur J Hum Genet. 2015 Mar;23(3):331-6. doi: 10.1038/ejhg.2014.13. Epub 2014 Feb 26.
16 Pregnenolone and pregnenolone-methyl-ether rescue neuronal defects caused by dysfunctional CLIP170 in a neuronal model of CDKL5 Deficiency Disorder.Neuropharmacology. 2020 Mar 1;164:107897. doi: 10.1016/j.neuropharm.2019.107897. Epub 2019 Nov 30.
17 Towards a better resolution of hepatitis C virus variants: CLIP sequencing of an HCV core fragment and automated assignment of genotypes and subtypes.J Virol Methods. 2008 Mar;148(1-2):25-33. doi: 10.1016/j.jviromet.2007.10.012. Epub 2007 Nov 28.
18 Classification of Genes: Standardized Clinical Validity Assessment of Gene-Disease Associations Aids Diagnostic Exome Analysis and Reclassifications. Hum Mutat. 2017 May;38(5):600-608. doi: 10.1002/humu.23183. Epub 2017 Feb 13.
19 On the perils of poor editing: regulation of peptide loading by HLA-DQ and H2-A molecules associated with celiac disease and type 1 diabetes.Expert Rev Mol Med. 2012 Jul 6;14:e15. doi: 10.1017/erm.2012.9.
20 Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
21 Comparison of HepG2 and HepaRG by whole-genome gene expression analysis for the purpose of chemical hazard identification. Toxicol Sci. 2010 May;115(1):66-79.
22 Transcriptional up-regulation of restin by all-trans retinoic acid through STAT1 in cancer cell differentiation process. Biochem Biophys Res Commun. 2006 May 19;343(4):1009-16. doi: 10.1016/j.bbrc.2006.02.176. Epub 2006 Mar 9.
23 Gene expression analysis of precision-cut human liver slices indicates stable expression of ADME-Tox related genes. Toxicol Appl Pharmacol. 2011 May 15;253(1):57-69.
24 Gamma-irradiation and doxorubicin treatment of normal human cells cause cell cycle arrest via different pathways. Mol Cells. 2005 Dec 31;20(3):331-8.
25 Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper. Physiol Genomics. 2009 Aug 7;38(3):386-401.
26 High-throughput ectopic expression screen for tamoxifen resistance identifies an atypical kinase that blocks autophagy. Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):2058-63.
27 Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment. J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
28 Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests. Arch Toxicol. 2017 Feb;91(2):839-864.
29 Reproducible chemical-induced changes in gene expression profiles in human hepatoma HepaRG cells under various experimental conditions. Toxicol In Vitro. 2009 Apr;23(3):466-75. doi: 10.1016/j.tiv.2008.12.018. Epub 2008 Dec 30.
30 Global gene expression analysis reveals differences in cellular responses to hydroxyl- and superoxide anion radical-induced oxidative stress in caco-2 cells. Toxicol Sci. 2010 Apr;114(2):193-203. doi: 10.1093/toxsci/kfp309. Epub 2009 Dec 31.
31 Gene expression in human hippocampus from cocaine abusers identifies genes which regulate extracellular matrix remodeling. PLoS One. 2007 Nov 14;2(11):e1187. doi: 10.1371/journal.pone.0001187.
32 Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells. BMC Med Genomics. 2009 Aug 20;2:55. doi: 10.1186/1755-8794-2-55.
33 Selenium and vitamin E: cell type- and intervention-specific tissue effects in prostate cancer. J Natl Cancer Inst. 2009 Mar 4;101(5):306-20.
34 Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study. Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.
35 Cell-based two-dimensional morphological assessment system to predict cancer drug-induced cardiotoxicity using human induced pluripotent stem cell-derived cardiomyocytes. Toxicol Appl Pharmacol. 2019 Nov 15;383:114761. doi: 10.1016/j.taap.2019.114761. Epub 2019 Sep 15.
36 Quantitative phosphoproteomics reveal cellular responses from caffeine, coumarin and quercetin in treated HepG2 cells. Toxicol Appl Pharmacol. 2022 Aug 15;449:116110. doi: 10.1016/j.taap.2022.116110. Epub 2022 Jun 7.
37 Identification of transcriptome signatures and biomarkers specific for potential developmental toxicants inhibiting human neural crest cell migration. Arch Toxicol. 2016 Jan;90(1):159-80.
38 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
39 From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.
40 Gene expression changes in primary human nasal epithelial cells exposed to formaldehyde in vitro. Toxicol Lett. 2010 Oct 5;198(2):289-95.
41 Transcriptional profiling of lactic acid treated reconstructed human epidermis reveals pathways underlying stinging and itch. Toxicol In Vitro. 2019 Jun;57:164-173.
42 Gene expression profile analysis of gallic acid-induced cell death process. Sci Rep. 2021 Aug 18;11(1):16743. doi: 10.1038/s41598-021-96174-1.
43 Functional lipidomics: Palmitic acid impairs hepatocellular carcinoma development by modulating membrane fluidity and glucose metabolism. Hepatology. 2017 Aug;66(2):432-448. doi: 10.1002/hep.29033. Epub 2017 Jun 16.
44 Global changes in gene regulation demonstrate that unconjugated bilirubin is able to upregulate and activate select components of the endoplasmic reticulum stress response pathway. J Biochem Mol Toxicol. 2010 Mar-Apr;24(2):73-88.