General Information of Drug Off-Target (DOT) (ID: OTK2N05B)

DOT Name 1,4-alpha-glucan-branching enzyme (GBE1)
Synonyms EC 2.4.1.18; Brancher enzyme; Glycogen-branching enzyme
Gene Name GBE1
Related Disease
Glycogen storage disease due to glycogen branching enzyme deficiency ( )
Type-1/2 diabetes ( )
Advanced cancer ( )
Arthrogryposis ( )
B-cell neoplasm ( )
Carnitine palmitoyltransferase II deficiency ( )
Chronic inflammatory demyelinating polyneuropathy ( )
Chylomicron retention disease ( )
Congenital myopathy ( )
Cytochrome-c oxidase deficiency disease ( )
Disorder of glycogen metabolism ( )
Esophageal squamous cell carcinoma ( )
Fetal akinesia deformation sequence 1 ( )
Gerstmann-Straussler-Scheinker syndrome ( )
Glycogen storage disease III ( )
Glycogen storage disease type II ( )
Leukodystrophy ( )
Lung adenocarcinoma ( )
Lung cancer ( )
Lung carcinoma ( )
Metabolic disorder ( )
Mitochondrial disease ( )
Mitochondrial trifunctional protein deficiency ( )
Multiple sclerosis ( )
Myopathy ( )
Neoplasm ( )
Porphyria ( )
Stroke ( )
Acute myelogenous leukaemia ( )
Adult polyglucosan body disease ( )
Cardiomyopathy ( )
Ovarian neoplasm ( )
Autosomal recessive multiple pterygium syndrome ( )
Dilated cardiomyopathy 1A ( )
Lethal multiple pterygium syndrome ( )
Melanoma ( )
UniProt ID
GLGB_HUMAN
3D Structure
Download
2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
4BZY; 5CLT; 5CLW
EC Number
2.4.1.18
Pfam ID
PF00128 ; PF02806 ; PF02922
Sequence
MAAPMTPAARPEDYEAALNAALADVPELARLLEIDPYLKPYAVDFQRRYKQFSQILKNIG
ENEGGIDKFSRGYESFGVHRCADGGLYCKEWAPGAEGVFLTGDFNGWNPFSYPYKKLDYG
KWELYIPPKQNKSVLVPHGSKLKVVITSKSGEILYRISPWAKYVVREGDNVNYDWIHWDP
EHSYEFKHSRPKKPRSLRIYESHVGISSHEGKVASYKHFTCNVLPRIKGLGYNCIQLMAI
MEHAYYASFGYQITSFFAASSRYGTPEELQELVDTAHSMGIIVLLDVVHSHASKNSADGL
NMFDGTDSCYFHSGPRGTHDLWDSRLFAYSSWEILRFLLSNIRWWLEEYRFDGFRFDGVT
SMLYHHHGVGQGFSGDYSEYFGLQVDEDALTYLMLANHLVHTLCPDSITIAEDVSGMPAL
CSPISQGGGGFDYRLAMAIPDKWIQLLKEFKDEDWNMGDIVYTLTNRRYLEKCIAYAESH
DQALVGDKSLAFWLMDAEMYTNMSVLTPFTPVIDRGIQLHKMIRLITHGLGGEGYLNFMG
NEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAP
QAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGH
QRLDHSTDFFSEAFEHNGRPYSLLVYIPSRVALILQNVDLPN
Function Required for normal glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule (Probable).
KEGG Pathway
Starch and sucrose metabolism (hsa00500 )
Metabolic pathways (hsa01100 )
Reactome Pathway
Glycogen storage disease type IV (GBE1) (R-HSA-3878781 )
Glycogen synthesis (R-HSA-3322077 )
BioCyc Pathway
MetaCyc:HS03772-MONOMER

Molecular Interaction Atlas (MIA) of This DOT

36 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Glycogen storage disease due to glycogen branching enzyme deficiency DIS3H8HJ Definitive Autosomal recessive [1]
Type-1/2 diabetes DISIUHAP Definitive Biomarker [2]
Advanced cancer DISAT1Z9 Strong Biomarker [3]
Arthrogryposis DISC81CM Strong Genetic Variation [4]
B-cell neoplasm DISVY326 Strong Genetic Variation [5]
Carnitine palmitoyltransferase II deficiency DIS3GFD9 Strong Biomarker [6]
Chronic inflammatory demyelinating polyneuropathy DISNGBLD Strong Genetic Variation [5]
Chylomicron retention disease DISOUTV5 Strong Biomarker [7]
Congenital myopathy DISLSK9G Strong Biomarker [8]
Cytochrome-c oxidase deficiency disease DISK7N3G Strong Biomarker [6]
Disorder of glycogen metabolism DISYGNOB Strong Biomarker [9]
Esophageal squamous cell carcinoma DIS5N2GV Strong Genetic Variation [10]
Fetal akinesia deformation sequence 1 DISKDI9L Strong Biomarker [11]
Gerstmann-Straussler-Scheinker syndrome DISIO6KC Strong Biomarker [12]
Glycogen storage disease III DISTXQ1P Strong Genetic Variation [13]
Glycogen storage disease type II DISXZPBC Strong Biomarker [13]
Leukodystrophy DISVY1TT Strong Biomarker [14]
Lung adenocarcinoma DISD51WR Strong Biomarker [3]
Lung cancer DISCM4YA Strong Biomarker [3]
Lung carcinoma DISTR26C Strong Biomarker [3]
Metabolic disorder DIS71G5H Strong Biomarker [15]
Mitochondrial disease DISKAHA3 Strong Biomarker [6]
Mitochondrial trifunctional protein deficiency DIS2MYYR Strong Biomarker [6]
Multiple sclerosis DISB2WZI Strong Genetic Variation [16]
Myopathy DISOWG27 Strong Genetic Variation [17]
Neoplasm DISZKGEW Strong Biomarker [3]
Porphyria DIS9YL4C Strong Genetic Variation [18]
Stroke DISX6UHX Strong Biomarker [14]
Acute myelogenous leukaemia DISCSPTN moderate Genetic Variation [19]
Adult polyglucosan body disease DISDQNH7 Moderate Autosomal recessive [20]
Cardiomyopathy DISUPZRG moderate Genetic Variation [21]
Ovarian neoplasm DISEAFTY moderate Biomarker [22]
Autosomal recessive multiple pterygium syndrome DISVK1D4 Limited Genetic Variation [23]
Dilated cardiomyopathy 1A DIS0RK9Z Limited Biomarker [9]
Lethal multiple pterygium syndrome DIS668BA Limited Genetic Variation [23]
Melanoma DIS1RRCY Limited Biomarker [24]
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⏷ Show the Full List of 36 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
23 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [25]
Ciclosporin DMAZJFX Approved Ciclosporin decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [26]
Tretinoin DM49DUI Approved Tretinoin increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [27]
Doxorubicin DMVP5YE Approved Doxorubicin increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [28]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [29]
Cisplatin DMRHGI9 Approved Cisplatin decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [30]
Estradiol DMUNTE3 Approved Estradiol decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [31]
Ivermectin DMDBX5F Approved Ivermectin decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [32]
Quercetin DM3NC4M Approved Quercetin increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [33]
Vorinostat DMWMPD4 Approved Vorinostat decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [34]
Phenobarbital DMXZOCG Approved Phenobarbital affects the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [35]
Dexamethasone DMMWZET Approved Dexamethasone increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [36]
Isotretinoin DM4QTBN Approved Isotretinoin decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [37]
Cidofovir DMA13GD Approved Cidofovir increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [38]
Fenofibrate DMFKXDY Approved Fenofibrate increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [38]
Ibuprofen DM8VCBE Approved Ibuprofen increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [38]
SNDX-275 DMH7W9X Phase 3 SNDX-275 decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [34]
Belinostat DM6OC53 Phase 2 Belinostat decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [34]
Afimoxifene DMFORDT Phase 2 Afimoxifene increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [39]
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [40]
Milchsaure DM462BT Investigative Milchsaure decreases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [42]
Nickel chloride DMI12Y8 Investigative Nickel chloride increases the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [43]
Choline DM5D9YK Investigative Choline affects the expression of 1,4-alpha-glucan-branching enzyme (GBE1). [44]
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⏷ Show the Full List of 23 Drug(s)
1 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Bisphenol A DM2ZLD7 Investigative Bisphenol A decreases the methylation of 1,4-alpha-glucan-branching enzyme (GBE1). [41]
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References

1 Technical standards for the interpretation and reporting of constitutional copy-number variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics (ACMG) and the Clinical Genome Resource (ClinGen). Genet Med. 2020 Feb;22(2):245-257. doi: 10.1038/s41436-019-0686-8. Epub 2019 Nov 6.
2 New Insight into the Mechanisms of Ginkgo Biloba Extract in Vascular Aging Prevention.Curr Vasc Pharmacol. 2020;18(4):334-345. doi: 10.2174/1570161117666190621150725.
3 Lung adenocarcinoma-intrinsic GBE1 signaling inhibits anti-tumor immunity.Mol Cancer. 2019 Jun 20;18(1):108. doi: 10.1186/s12943-019-1027-x.
4 The genomic and clinical landscape of fetal akinesia.Genet Med. 2020 Mar;22(3):511-523. doi: 10.1038/s41436-019-0680-1. Epub 2019 Nov 4.
5 Expanded teased nerve fibre pathological conditions in disease association.J Neurol Neurosurg Psychiatry. 2019 Feb;90(2):138-140. doi: 10.1136/jnnp-2018-319077. Epub 2018 Nov 1.
6 Neonatal metabolic myopathies.Semin Perinatol. 1999 Apr;23(2):125-51. doi: 10.1016/s0146-0005(99)80046-9.
7 Association of the congenital neuromuscular form of glycogen storage disease type IV with a large deletion and recurrent frameshift mutation.J Child Neurol. 2012 Feb;27(2):204-8. doi: 10.1177/0883073811415107. Epub 2011 Sep 13.
8 Clinical and genetic heterogeneity of branching enzyme deficiency (glycogenosis type IV). Neurology. 2004 Sep 28;63(6):1053-8. doi: 10.1212/01.wnl.0000138429.11433.0d.
9 Advantages and pitfalls of an extended gene panel for investigating complex neurometabolic phenotypes.Brain. 2016 Nov 1;139(11):2844-2854. doi: 10.1093/brain/aww221.
10 Genome wide copy number analyses of superficial esophageal squamous cell carcinoma with and without metastasis.Oncotarget. 2017 Jan 17;8(3):5069-5080. doi: 10.18632/oncotarget.13847.
11 Metabolic disorders of fetal life: glycogenoses and mitochondrial defects of the mitochondrial respiratory chain.Semin Fetal Neonatal Med. 2011 Aug;16(4):181-9. doi: 10.1016/j.siny.2011.04.010. Epub 2011 May 28.
12 Glycogen branching enzyme (GBE1) mutation causing equine glycogen storage disease IV.Mamm Genome. 2004 Jul;15(7):570-7. doi: 10.1007/s00335-004-2369-1.
13 Acid maltase deficiency and related myopathies.Neurol Clin. 2000 Feb;18(1):151-65. doi: 10.1016/s0733-8619(05)70182-1.
14 Acute but transient neurological deterioration revealing adult polyglucosan body disease.J Neurol Sci. 2013 Jan 15;324(1-2):179-82. doi: 10.1016/j.jns.2012.10.015. Epub 2012 Nov 10.
15 Myopathies Related to Glycogen Metabolism Disorders.Neurotherapeutics. 2018 Oct;15(4):915-927. doi: 10.1007/s13311-018-00684-2.
16 Branching enzyme deficiency: expanding the clinical spectrum.JAMA Neurol. 2014 Jan;71(1):41-7. doi: 10.1001/jamaneurol.2013.4888.
17 A novel missense mutation in the glycogen branching enzyme gene in a child with myopathy and hepatopathy.Neuromuscul Disord. 1999 Oct;9(6-7):403-7. doi: 10.1016/s0960-8966(99)00040-1.
18 Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET.Nat Commun. 2019 Nov 29;10(1):5463. doi: 10.1038/s41467-019-13237-8.
19 Genome-wide haplotype association study identify the FGFR2 gene as a risk gene for acute myeloid leukemia.Oncotarget. 2017 Jan 31;8(5):7891-7899. doi: 10.18632/oncotarget.13631.
20 Classification of Genes: Standardized Clinical Validity Assessment of Gene-Disease Associations Aids Diagnostic Exome Analysis and Reclassifications. Hum Mutat. 2017 May;38(5):600-608. doi: 10.1002/humu.23183. Epub 2017 Feb 13.
21 Congenital type IV glycogenosis: the spectrum of pleomorphic polyglucosan bodies in muscle, nerve, and spinal cord with two novel mutations in the GBE1 gene.Acta Neuropathol. 2008 Nov;116(5):491-506. doi: 10.1007/s00401-008-0417-8. Epub 2008 Jul 26.
22 Transcriptome analysis of serous ovarian cancers identifies differentially expressed chromosome 3 genes.Mol Carcinog. 2008 Jan;47(1):56-65. doi: 10.1002/mc.20361.
23 Whole exome sequencing in foetal akinesia expands the genotype-phenotype spectrum of GBE1 glycogen storage disease mutations.Neuromuscul Disord. 2013 Feb;23(2):165-9. doi: 10.1016/j.nmd.2012.11.005. Epub 2012 Dec 3.
24 Transcriptional response to hypoxic stress in melanoma and prognostic potential of GBE1 and BNIP3.Oncotarget. 2017 Oct 30;8(65):108786-108801. doi: 10.18632/oncotarget.22150. eCollection 2017 Dec 12.
25 Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach. Arch Toxicol. 2013 Jan;87(1):123-43.
26 Integrating multiple omics to unravel mechanisms of Cyclosporin A induced hepatotoxicity in vitro. Toxicol In Vitro. 2015 Apr;29(3):489-501.
27 Transcriptional and Metabolic Dissection of ATRA-Induced Granulocytic Differentiation in NB4 Acute Promyelocytic Leukemia Cells. Cells. 2020 Nov 5;9(11):2423. doi: 10.3390/cells9112423.
28 Bringing in vitro analysis closer to in vivo: studying doxorubicin toxicity and associated mechanisms in 3D human microtissues with PBPK-based dose modelling. Toxicol Lett. 2018 Sep 15;294:184-192.
29 Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper. Physiol Genomics. 2009 Aug 7;38(3):386-401.
30 Low doses of cisplatin induce gene alterations, cell cycle arrest, and apoptosis in human promyelocytic leukemia cells. Biomark Insights. 2016 Aug 24;11:113-21.
31 Comparison of phenotypic and transcriptomic effects of false-positive genotoxins, true genotoxins and non-genotoxins using HepG2 cells. Mutagenesis. 2011 Sep;26(5):593-604.
32 Quantitative proteomics reveals a broad-spectrum antiviral property of ivermectin, benefiting for COVID-19 treatment. J Cell Physiol. 2021 Apr;236(4):2959-2975. doi: 10.1002/jcp.30055. Epub 2020 Sep 22.
33 Hypoxia-inducible factor-1 (HIF-1) pathway activation by quercetin in human lens epithelial cells. Exp Eye Res. 2009 Dec;89(6):995-1002. doi: 10.1016/j.exer.2009.08.011. Epub 2009 Sep 1.
34 Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests. Arch Toxicol. 2017 Feb;91(2):839-864.
35 Reproducible chemical-induced changes in gene expression profiles in human hepatoma HepaRG cells under various experimental conditions. Toxicol In Vitro. 2009 Apr;23(3):466-75. doi: 10.1016/j.tiv.2008.12.018. Epub 2008 Dec 30.
36 Identification of mechanisms of action of bisphenol a-induced human preadipocyte differentiation by transcriptional profiling. Obesity (Silver Spring). 2014 Nov;22(11):2333-43.
37 Temporal changes in gene expression in the skin of patients treated with isotretinoin provide insight into its mechanism of action. Dermatoendocrinol. 2009 May;1(3):177-87.
38 Transcriptomics hit the target: monitoring of ligand-activated and stress response pathways for chemical testing. Toxicol In Vitro. 2015 Dec 25;30(1 Pt A):7-18.
39 Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome. Cancer Res. 2006 Jul 15;66(14):7334-40.
40 Benzo[a]pyrene-induced changes in microRNA-mRNA networks. Chem Res Toxicol. 2012 Apr 16;25(4):838-49.
41 DNA methylome-wide alterations associated with estrogen receptor-dependent effects of bisphenols in breast cancer. Clin Epigenetics. 2019 Oct 10;11(1):138. doi: 10.1186/s13148-019-0725-y.
42 Transcriptional profiling of lactic acid treated reconstructed human epidermis reveals pathways underlying stinging and itch. Toxicol In Vitro. 2019 Jun;57:164-173.
43 Nickel-induced 1,4-alpha-glucan branching enzyme 1 up-regulation via the hypoxic signaling pathway. Toxicol Appl Pharmacol. 2004 May 1;196(3):404-9. doi: 10.1016/j.taap.2004.01.012.
44 Lymphocyte gene expression in subjects fed a low-choline diet differs between those who develop organ dysfunction and those who do not. Am J Clin Nutr. 2007 Jul;86(1):230-9. doi: 10.1093/ajcn/86.1.230.