General Information of Drug Off-Target (DOT) (ID: OTZM3MJJ)

DOT Name Lysine-specific demethylase 6A (KDM6A)
Synonyms
EC 1.14.11.68; Histone demethylase UTX; Ubiquitously-transcribed TPR protein on the X chromosome; Ubiquitously-transcribed X chromosome tetratricopeptide repeat protein; -trimethyl-L-lysine(27) demethylase 6A
Gene Name KDM6A
Related Disease
Kabuki syndrome 2 ( )
Neoplasm ( )
Acute myelogenous leukaemia ( )
Advanced cancer ( )
Autoimmune disease ( )
Benign neoplasm ( )
Bladder cancer ( )
Bone osteosarcoma ( )
Breast cancer ( )
Breast carcinoma ( )
Breast neoplasm ( )
Castration-resistant prostate carcinoma ( )
Chronic myelomonocytic leukemia ( )
Clear cell renal carcinoma ( )
Coloboma ( )
Colorectal carcinoma ( )
Esophageal squamous cell carcinoma ( )
Gastric cancer ( )
Myelodysplastic syndrome ( )
Nervous system inflammation ( )
Osteosarcoma ( )
Pancreatic cancer ( )
Plasma cell myeloma ( )
Promyelocytic leukaemia ( )
Prostate carcinoma ( )
Prostate neoplasm ( )
Sensorineural hearing loss disorder ( )
Stomach cancer ( )
T-cell acute lymphoblastic leukaemia ( )
Transitional cell carcinoma ( )
Urinary bladder cancer ( )
Urinary bladder neoplasm ( )
Diabetic kidney disease ( )
Medulloblastoma ( )
Kabuki syndrome ( )
Adult lymphoma ( )
Glioblastoma multiforme ( )
leukaemia ( )
Leukemia ( )
Lung cancer ( )
Lung carcinoma ( )
Lymphoma ( )
Melanoma ( )
Pediatric lymphoma ( )
Prostate cancer ( )
Renal cell carcinoma ( )
Turner syndrome ( )
UniProt ID
KDM6A_HUMAN
3D Structure
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2D Sequence (FASTA)
Download
3D Structure (PDB)
Download
PDB ID
3AVR; 3AVS; 6FUK; 6FUL
EC Number
1.14.11.68
Pfam ID
PF02373 ; PF21322 ; PF21326 ; PF13432 ; PF13181
Sequence
MKSCGVSLATAAAAAAAFGDEEKKMAAGKASGESEEASPSLTAEEREALGGLDSRLFGFV
RFHEDGARTKALLGKAVRCYESLILKAEGKVESDFFCQLGHFNLLLEDYPKALSAYQRYY
SLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVN
TDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTENLSAQ
VKATVLQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYSSIGKV
QDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDHGHAAAWMDLGT
LYESCNQPQDAIKCYLNATRSKSCSNTSALAARIKYLQAQLCNLPQGSLQNKTKLLPSIE
EAWSLPIPAELTSRQGAMNTAQQNTSDNWSGGHAVSHPPVQQQAHSWCLTPQKLQHLEQL
RANRNNLNPAQKLMLEQLESQFVLMQQHQMRPTGVAQVRSTGIPNGPTADSSLPTNSVSG
QQPQLALTRVPSVSQPGVRPACPGQPLANGPFSAGHVPCSTSRTLGSTDTILIGNNHITG
SGSNGNVPYLQRNALTLPHNRTNLTSSAEEPWKNQLSNSTQGLHKGQSSHSAGPNGERPL
SSTGPSQHLQAAGSGIQNQNGHPTLPSNSVTQGAALNHLSSHTATSGGQQGITLTKESKP
SGNILTVPETSRHTGETPNSTASVEGLPNHVHQMTADAVCSPSHGDSKSPGLLSSDNPQL
SALLMGKANNNVGTGTCDKVNNIHPAVHTKTDNSVASSPSSAISTATPSPKSTEQTTTNS
VTSLNSPHSGLHTINGEGMEESQSPMKTDLLLVNHKPSPQIIPSMSVSIYPSSAEVLKAC
RNLGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFC
TNPNNPVTVIRGLAGALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKI
WHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPFK
TIKFGTNIDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLSHVGHTILGMNTVQLYMKVPG
SRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLMGSWWPNLEDL
YEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNK
LQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIWH
GRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKM
EDLMQVYDQFTLAPPLPSASS
Function
Histone demethylase that specifically demethylates 'Lys-27' of histone H3, thereby playing a central role in histone code. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-27'. Plays a central role in regulation of posterior development, by regulating HOX gene expression. Demethylation of 'Lys-27' of histone H3 is concomitant with methylation of 'Lys-4' of histone H3, and regulates the recruitment of the PRC1 complex and monoubiquitination of histone H2A. Plays a demethylase-independent role in chromatin remodeling to regulate T-box family member-dependent gene expression.
KEGG Pathway
Transcriptio.l misregulation in cancer (hsa05202 )
Reactome Pathway
Activation of anterior HOX genes in hindbrain development during early embryogenesis (R-HSA-5617472 )
Formation of WDR5-containing histone-modifying complexes (R-HSA-9772755 )
Chromatin modifications during the maternal to zygotic transition (MZT) (R-HSA-9821002 )
HDMs demethylate histones (R-HSA-3214842 )
BioCyc Pathway
MetaCyc:ENSG00000147050-MONOMER

Molecular Interaction Atlas (MIA) of This DOT

47 Disease(s) Related to This DOT
Disease Name Disease ID Evidence Level Mode of Inheritance REF
Kabuki syndrome 2 DISHI24Y Definitive X-linked [1]
Neoplasm DISZKGEW Definitive Genetic Variation [2]
Acute myelogenous leukaemia DISCSPTN Strong Genetic Variation [2]
Advanced cancer DISAT1Z9 Strong Genetic Variation [3]
Autoimmune disease DISORMTM Strong Altered Expression [4]
Benign neoplasm DISDUXAD Strong Biomarker [5]
Bladder cancer DISUHNM0 Strong Altered Expression [6]
Bone osteosarcoma DIST1004 Strong Altered Expression [7]
Breast cancer DIS7DPX1 Strong Biomarker [8]
Breast carcinoma DIS2UE88 Strong Biomarker [8]
Breast neoplasm DISNGJLM Strong Biomarker [9]
Castration-resistant prostate carcinoma DISVGAE6 Strong Biomarker [10]
Chronic myelomonocytic leukemia DISIL8UR Strong Genetic Variation [11]
Clear cell renal carcinoma DISBXRFJ Strong Biomarker [12]
Coloboma DISP39N5 Strong Biomarker [13]
Colorectal carcinoma DIS5PYL0 Strong Biomarker [14]
Esophageal squamous cell carcinoma DIS5N2GV Strong Biomarker [15]
Gastric cancer DISXGOUK Strong Biomarker [16]
Myelodysplastic syndrome DISYHNUI Strong Biomarker [17]
Nervous system inflammation DISB3X5A Strong Biomarker [4]
Osteosarcoma DISLQ7E2 Strong Altered Expression [7]
Pancreatic cancer DISJC981 Strong Biomarker [18]
Plasma cell myeloma DIS0DFZ0 Strong Genetic Variation [19]
Promyelocytic leukaemia DISYGG13 Strong Biomarker [20]
Prostate carcinoma DISMJPLE Strong Biomarker [21]
Prostate neoplasm DISHDKGQ Strong Biomarker [22]
Sensorineural hearing loss disorder DISJV45Z Strong Biomarker [23]
Stomach cancer DISKIJSX Strong Biomarker [16]
T-cell acute lymphoblastic leukaemia DIS17AI2 Strong Biomarker [24]
Transitional cell carcinoma DISWVVDR Strong Biomarker [25]
Urinary bladder cancer DISDV4T7 Strong Altered Expression [6]
Urinary bladder neoplasm DIS7HACE Strong Altered Expression [6]
Diabetic kidney disease DISJMWEY moderate Biomarker [26]
Medulloblastoma DISZD2ZL moderate Altered Expression [27]
Kabuki syndrome DISZN97H Supportive Autosomal dominant [28]
Adult lymphoma DISK8IZR Limited Genetic Variation [29]
Glioblastoma multiforme DISK8246 Limited Altered Expression [30]
leukaemia DISS7D1V Limited Biomarker [31]
Leukemia DISNAKFL Limited Biomarker [31]
Lung cancer DISCM4YA Limited Altered Expression [32]
Lung carcinoma DISTR26C Limited Altered Expression [32]
Lymphoma DISN6V4S Limited Genetic Variation [29]
Melanoma DIS1RRCY Limited Genetic Variation [33]
Pediatric lymphoma DIS51BK2 Limited Genetic Variation [29]
Prostate cancer DISF190Y Limited Biomarker [21]
Renal cell carcinoma DISQZ2X8 Limited Biomarker [12]
Turner syndrome DIS2035C Limited Biomarker [34]
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⏷ Show the Full List of 47 Disease(s)
Molecular Interaction Atlas (MIA) Jump to Detail Molecular Interaction Atlas of This DOT
This DOT Affected the Drug Response of 1 Drug(s)
Drug Name Drug ID Highest Status Interaction REF
Methotrexate DM2TEOL Approved Lysine-specific demethylase 6A (KDM6A) affects the response to substance of Methotrexate. [52]
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16 Drug(s) Affected the Gene/Protein Processing of This DOT
Drug Name Drug ID Highest Status Interaction REF
Valproate DMCFE9I Approved Valproate affects the expression of Lysine-specific demethylase 6A (KDM6A). [35]
Ciclosporin DMAZJFX Approved Ciclosporin increases the expression of Lysine-specific demethylase 6A (KDM6A). [36]
Tretinoin DM49DUI Approved Tretinoin increases the expression of Lysine-specific demethylase 6A (KDM6A). [37]
Doxorubicin DMVP5YE Approved Doxorubicin decreases the expression of Lysine-specific demethylase 6A (KDM6A). [38]
Cupric Sulfate DMP0NFQ Approved Cupric Sulfate increases the expression of Lysine-specific demethylase 6A (KDM6A). [39]
Vorinostat DMWMPD4 Approved Vorinostat decreases the expression of Lysine-specific demethylase 6A (KDM6A). [40]
Testosterone DM7HUNW Approved Testosterone decreases the expression of Lysine-specific demethylase 6A (KDM6A). [41]
Triclosan DMZUR4N Approved Triclosan decreases the expression of Lysine-specific demethylase 6A (KDM6A). [42]
Hydroquinone DM6AVR4 Approved Hydroquinone decreases the expression of Lysine-specific demethylase 6A (KDM6A). [43]
Testosterone enanthate DMB6871 Approved Testosterone enanthate affects the expression of Lysine-specific demethylase 6A (KDM6A). [44]
Berberine DMC5Q8X Phase 4 Berberine increases the expression of Lysine-specific demethylase 6A (KDM6A). [45]
(+)-JQ1 DM1CZSJ Phase 1 (+)-JQ1 increases the expression of Lysine-specific demethylase 6A (KDM6A). [47]
Leflunomide DMR8ONJ Phase 1 Trial Leflunomide increases the expression of Lysine-specific demethylase 6A (KDM6A). [48]
Geldanamycin DMS7TC5 Discontinued in Phase 2 Geldanamycin increases the expression of Lysine-specific demethylase 6A (KDM6A). [49]
Trichostatin A DM9C8NX Investigative Trichostatin A decreases the expression of Lysine-specific demethylase 6A (KDM6A). [50]
Formaldehyde DM7Q6M0 Investigative Formaldehyde decreases the expression of Lysine-specific demethylase 6A (KDM6A). [51]
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⏷ Show the Full List of 16 Drug(s)
1 Drug(s) Affected the Post-Translational Modifications of This DOT
Drug Name Drug ID Highest Status Interaction REF
Benzo(a)pyrene DMN7J43 Phase 1 Benzo(a)pyrene affects the methylation of Lysine-specific demethylase 6A (KDM6A). [46]
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References

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2 Loss of KDM6A confers drug resistance in acute myeloid leukemia.Leukemia. 2020 Jan;34(1):50-62. doi: 10.1038/s41375-019-0497-6. Epub 2019 Jun 14.
3 UTX Mutations in Human Cancer.Cancer Cell. 2019 Feb 11;35(2):168-176. doi: 10.1016/j.ccell.2019.01.001.
4 X-tra X: An escape to autoimmunity.J Clin Invest. 2019 Aug 12;129(9):3536-3538. doi: 10.1172/JCI130312. eCollection 2019 Aug 12.
5 Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer.Nat Genet. 2009 May;41(5):521-3. doi: 10.1038/ng.349. Epub 2009 Mar 29.
6 Loss of tumor suppressor KDM6A amplifies PRC2-regulated transcriptional repression in bladder cancer and can be targeted through inhibition of EZH2.Sci Transl Med. 2017 Feb 22;9(378):eaai8312. doi: 10.1126/scitranslmed.aai8312.
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9 Histone-modifier gene expression profiles are associated with pathological and clinical outcomes in human breast cancer.Anticancer Res. 2011 Dec;31(12):4115-25.
10 Inhibitor of H3K27 demethylase JMJD3/UTX GSK-J4 is a potential therapeutic option for castration resistant prostate cancer.Oncotarget. 2017 Jul 8;8(37):62131-62142. doi: 10.18632/oncotarget.19100. eCollection 2017 Sep 22.
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12 Biochemical and Epigenetic Insights into L-2-Hydroxyglutarate, a Potential Therapeutic Target in Renal Cancer.Clin Cancer Res. 2018 Dec 15;24(24):6433-6446. doi: 10.1158/1078-0432.CCR-18-1727. Epub 2018 Aug 14.
13 A case of exudative vitreoretinopathy and chorioretinal coloboma associated with microcephaly in a female with contiguous Xp11.3-11.4 deletion.Ophthalmic Genet. 2018 Jun;39(3):396-398. doi: 10.1080/13816810.2018.1443342. Epub 2018 Apr 4.
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16 Synergistic triad epistasis of epigenetic H3K27me modifier genes, EZH2, KDM6A, and KDM6B, in gastric cancer susceptibility.Gastric Cancer. 2019 May;22(3):640-644. doi: 10.1007/s10120-018-0888-9. Epub 2018 Oct 29.
17 Epigenetic drug library screening identified an LSD1 inhibitor to target UTX-deficient cells for differentiation therapy.Signal Transduct Target Ther. 2019 Apr 26;4:11. doi: 10.1038/s41392-019-0040-2. eCollection 2019.
18 Loss of KDM6A characterizes a poor prognostic subtype of human pancreatic cancer and potentiates HDAC inhibitor lethality.Int J Cancer. 2019 Jul 1;145(1):192-205. doi: 10.1002/ijc.32072. Epub 2018 Dec 30.
19 UTX/KDM6A Loss Enhances the Malignant Phenotype of Multiple Myeloma and Sensitizes Cells to EZH2 inhibition.Cell Rep. 2017 Oct 17;21(3):628-640. doi: 10.1016/j.celrep.2017.09.078.
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25 Contingencies of UTX/KDM6A Action in Urothelial Carcinoma.Cancers (Basel). 2019 Apr 4;11(4):481. doi: 10.3390/cancers11040481.
26 Histone demethylase UTX is a therapeutic target for diabetic kidney disease.J Physiol. 2019 Mar;597(6):1643-1660. doi: 10.1113/JP277367. Epub 2018 Dec 25.
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29 Epstein-Barr virus-negative extranodal "true" natural killer-cell lymphoma harbouring a KDM6A mutation.Hematol Oncol. 2018 Feb;36(1):328-335. doi: 10.1002/hon.2459. Epub 2017 Jul 10.
30 Increased expression of the histone H3 lysine 4 methyltransferase MLL4 and the histone H3 lysine 27 demethylase UTX prolonging the overall survival of patients with glioblastoma and a methylated MGMT promoter.J Neurosurg. 2017 May;126(5):1461-1471. doi: 10.3171/2016.4.JNS1652. Epub 2016 Jul 1.
31 MBD3/NuRD loss participates with KDM6A program to promote DOCK5/8 expression and Rac GTPase activation in human acute myeloid leukemia.FASEB J. 2019 Apr;33(4):5268-5286. doi: 10.1096/fj.201801035R. Epub 2019 Jan 22.
32 Epigenetic regulation of epithelial-mesenchymal transition by KDM6A histone demethylase in lung cancer cells.Biochem Biophys Res Commun. 2017 Sep 2;490(4):1407-1413. doi: 10.1016/j.bbrc.2017.07.048. Epub 2017 Jul 8.
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34 Congenital Hyperinsulinism in Infants with Turner Syndrome: Possible Association with Monosomy X and KDM6A Haploinsufficiency.Horm Res Paediatr. 2018;89(6):413-422. doi: 10.1159/000488347. Epub 2018 Jun 14.
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41 The exosome-like vesicles derived from androgen exposed-prostate stromal cells promote epithelial cells proliferation and epithelial-mesenchymal transition. Toxicol Appl Pharmacol. 2021 Jan 15;411:115384. doi: 10.1016/j.taap.2020.115384. Epub 2020 Dec 25.
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