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Prognostic genes of melanoma identified by weighted gene co-expression network analysis and drug repositioning using a network-based method.Oncol Lett. 2019 Dec;18(6):6066-6078. doi: 10.3892/ol.2019.10961. Epub 2019 Oct 4.
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Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer.Nat Genet. 2012 Oct;44(10):1111-6. doi: 10.1038/ng.2405. Epub 2012 Sep 2.
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Four novel biomarkers for bladder cancer identified by weighted gene coexpression network analysis.J Cell Physiol. 2019 Aug;234(10):19073-19087. doi: 10.1002/jcp.28546. Epub 2019 Mar 29.
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Estrogen receptor 1 and progesterone receptor are distinct biomarkers and prognostic factors in estrogen receptor-positive breast cancer: Evidence from a bioinformatic analysis.Biomed Pharmacother. 2020 Jan;121:109647. doi: 10.1016/j.biopha.2019.109647. Epub 2019 Nov 13.
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Identification of molecular signatures and pathways to identify novel therapeutic targets in Alzheimer's disease: Insights from a systems biomedicine perspective.Genomics. 2020 Mar;112(2):1290-1299. doi: 10.1016/j.ygeno.2019.07.018. Epub 2019 Aug 1.
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Identification of key modules and prognostic markers in adrenocortical carcinoma by weighted gene co-expression network analysis.Oncol Lett. 2019 Oct;18(4):3673-3681. doi: 10.3892/ol.2019.10725. Epub 2019 Aug 6.
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Identification of lncRNA TRPM2-AS/miR-140-3p/PYCR1 axis's proliferates and anti-apoptotic effect on breast cancer using co-expression network analysis.Cancer Biol Ther. 2019;20(6):760-773. doi: 10.1080/15384047.2018.1564563. Epub 2019 Feb 27.
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Weighted Gene Co-Expression Network Analysis Identifies Critical Genes in the Development of Heart Failure After Acute Myocardial Infarction.Front Genet. 2019 Nov 26;10:1214. doi: 10.3389/fgene.2019.01214. eCollection 2019.
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A network-based predictive gene expression signature for recurrence risks in stage II colorectal cancer.Cancer Med. 2020 Jan;9(1):179-193. doi: 10.1002/cam4.2642. Epub 2019 Nov 14.
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Five Hub Genes Can Be The Potential DNA Methylation Biomarkers For Cholangiocarcinoma Using Bioinformatics Analysis.Onco Targets Ther. 2019 Oct 11;12:8355-8365. doi: 10.2147/OTT.S203342. eCollection 2019.
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Mining Featured Biomarkers Linked with Epithelial Ovarian CancerBased on Bioinformatics.Diagnostics (Basel). 2019 Apr 9;9(2):39. doi: 10.3390/diagnostics9020039.
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Identifying prognosis and metastasis-associated genes associated with Ewing sarcoma by weighted gene co-expression network analysis.Oncol Lett. 2019 Oct;18(4):3527-3536. doi: 10.3892/ol.2019.10681. Epub 2019 Jul 29.
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Identification of specific modules and hub genes associated with the progression of gastric cancer.Carcinogenesis. 2019 Oct 16;40(10):1269-1277. doi: 10.1093/carcin/bgz040.
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PBK as a Potential Biomarker Associated with Prognosis of Glioblastoma.J Mol Neurosci. 2020 Jan;70(1):56-64. doi: 10.1007/s12031-019-01400-1. Epub 2019 Oct 15.
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Integrative Bioinformatics Analysis Identifies NEK2 as a Potential Biomarker in Head and Neck Squamous Cell Carcinoma.J Comput Biol. 2020 Jan;27(1):100-108. doi: 10.1089/cmb.2019.0208. Epub 2019 Aug 28.
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Identification of potential hub genes related to the progression and prognosis of hepatocellular carcinoma through integrated bioinformatics analysis.Oncol Rep. 2020 Jan;43(1):133-146. doi: 10.3892/or.2019.7400. Epub 2019 Nov 6.
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Five genes may predict metastasis in non-small cell lung cancer using bioinformatics analysis.Oncol Lett. 2019 Aug;18(2):1723-1732. doi: 10.3892/ol.2019.10498. Epub 2019 Jun 19.
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Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.Nat Neurosci. 2019 Mar;22(3):343-352. doi: 10.1038/s41593-018-0326-7. Epub 2019 Feb 4.
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Construction of a circRNA-miRNA-mRNA network to explore the pathogenesis and treatment of pancreatic ductal adenocarcinoma.J Cell Biochem. 2020 Jan;121(1):394-406. doi: 10.1002/jcb.29194. Epub 2019 Jun 24.
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Bioinformatics analysis identifies hub genes and pathways in nasopharyngeal carcinoma.Oncol Lett. 2019 Oct;18(4):3637-3645. doi: 10.3892/ol.2019.10707. Epub 2019 Aug 2.
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Comprehensive transcriptomic analysis indicates brain regional specific alterations in type 2 diabetes.Aging (Albany NY). 2019 Aug 26;11(16):6398-6421. doi: 10.18632/aging.102196. Epub 2019 Aug 26.
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Identification of key microRNAs and hub genes in non-small-cell lung cancer using integrative bioinformatics and functional analyses.J Cell Biochem. 2020 Mar;121(3):2690-2703. doi: 10.1002/jcb.29489. Epub 2019 Nov 6.
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Analysis of differentially expressed genes in rheumatoid arthritis and osteoarthritis by integrated microarray analysis.J Cell Biochem. 2019 Aug;120(8):12653-12664. doi: 10.1002/jcb.28533. Epub 2019 Mar 4.
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Gene co-expression network analysis identifies BRCC3 as a key regulator in osteogenic differentiation of osteoblasts through a -catenin signaling dependent pathway.Iran J Basic Med Sci. 2019 Feb;22(2):173-178. doi: 10.22038/IJBMS.2018.29498.7123.
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Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data.IEEE/ACM Trans Comput Biol Bioinform. 2018 Nov-Dec;15(6):2079-2085. doi: 10.1109/TCBB.2018.2809603. Epub 2018 Feb 26.
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Identification of Acute Pancreatitis-Related Genes and Pathways by Integrated Bioinformatics Analysis.Dig Dis Sci. 2020 Jun;65(6):1720-1732. doi: 10.1007/s10620-019-05928-5. Epub 2019 Nov 13.
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Aberrantly expressed long noncoding RNAs and genes in Parkinson's disease.Neuropsychiatr Dis Treat. 2018 Nov 22;14:3219-3229. doi: 10.2147/NDT.S178435. eCollection 2018.
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Identification of relevant hub genes for early intervention at gene coexpression modules with altered predicted expression in schizophrenia.Prog Neuropsychopharmacol Biol Psychiatry. 2020 Mar 2;98:109815. doi: 10.1016/j.pnpbp.2019.109815. Epub 2019 Nov 9.
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Bioinformatic gene analysis for potential biomarkers and therapeutic targets of atrial fibrillation-related stroke.J Transl Med. 2019 Feb 13;17(1):45. doi: 10.1186/s12967-019-1790-x.
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Analysis of Genes Involved in Ulcerative Colitis Activity and Tumorigenesis Through Systematic Mining of Gene Co-expression Networks.Front Physiol. 2019 May 31;10:662. doi: 10.3389/fphys.2019.00662. eCollection 2019.
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Identification of differentially expressed key genes between glioblastoma and low-grade glioma by bioinformatics analysis.PeerJ. 2019 Mar 7;7:e6560. doi: 10.7717/peerj.6560. eCollection 2019.
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Clinical and Expression Significance of AKT1 by Co-expression Network Analysis in Endometrial Cancer.Front Oncol. 2019 Nov 6;9:1147. doi: 10.3389/fonc.2019.01147. eCollection 2019.
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TPM2 as a potential predictive biomarker for atherosclerosis.Aging (Albany NY). 2019 Sep 5;11(17):6960-6982. doi: 10.18632/aging.102231. Epub 2019 Sep 5.
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Integrated Transcriptome Analyses Revealed Key Target Genes in Mouse Models of Autism.Autism Res. 2020 Mar;13(3):352-368. doi: 10.1002/aur.2240. Epub 2019 Nov 19.
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Construction and analysis of circular RNA molecular regulatory networks in clear cell renal cell carcinoma.Mol Med Rep. 2020 Jan;21(1):141-150. doi: 10.3892/mmr.2019.10811. Epub 2019 Nov 11.
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Identification of a blood-based 12-gene signature that predicts the severity of coronary artery stenosis: An integrative approach based on gene network construction, Support Vector Machine algorithm, and multi-cohort validation.Atherosclerosis. 2019 Dec;291:34-43. doi: 10.1016/j.atherosclerosis.2019.10.001. Epub 2019 Oct 9.
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Integrative genomics analysis of hub genes and their relationship with prognosis and signaling pathways in esophageal squamous cell carcinoma.Mol Med Rep. 2019 Oct;20(4):3649-3660. doi: 10.3892/mmr.2019.10608. Epub 2019 Aug 23.
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Identification of Key Pathways and Genes in L4 Dorsal Root Ganglion (DRG) After Sciatic Nerve Injury via Microarray Analysis.J Invest Surg. 2020 Feb;33(2):172-180. doi: 10.1080/08941939.2018.1452996. Epub 2018 Apr 19.
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Weighted correlation network analysis of triple-negative breast cancer progression: Identifying specific modules and hub genes based on the GEO and TCGA database.Oncol Lett. 2019 Aug;18(2):1207-1217. doi: 10.3892/ol.2019.10407. Epub 2019 May 27.
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Integrative omics data analyses of repeated dose toxicity of valproic acid in vitro reveal new mechanisms of steatosis induction. Toxicology. 2018 Jan 15;393:160-170.
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Definition of transcriptome-based indices for quantitative characterization of chemically disturbed stem cell development: introduction of the STOP-Toxukn and STOP-Toxukk tests. Arch Toxicol. 2017 Feb;91(2):839-864.
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Air pollution and DNA methylation alterations in lung cancer: A systematic and comparative study. Oncotarget. 2017 Jan 3;8(1):1369-1391. doi: 10.18632/oncotarget.13622.
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From transient transcriptome responses to disturbed neurodevelopment: role of histone acetylation and methylation as epigenetic switch between reversible and irreversible drug effects. Arch Toxicol. 2014 Jul;88(7):1451-68.
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Geraniol suppresses prostate cancer growth through down-regulation of E2F8. Cancer Med. 2016 Oct;5(10):2899-2908.
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